Construct: ORF TRCN0000479611
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011947.2_s317c1
- Derived from:
- ccsbBroadEn_14185
- DNA Barcode:
- CTTGTATGTGCCGAACTACTTACA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAPBPL (55080)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479611
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55080 | TAPBPL | TAP binding protein like | NM_018009.5 | 99.1% | 98.5% | (many diffs) |
| 2 | human | 55080 | TAPBPL | TAP binding protein like | XM_005253700.4 | 92.9% | 91.1% | (many diffs) |
| 3 | human | 55080 | TAPBPL | TAP binding protein like | NR_147126.1 | 74% | (many diffs) | |
| 4 | human | 55080 | TAPBPL | TAP binding protein like | XR_429016.3 | 73% | (many diffs) | |
| 5 | human | 55080 | TAPBPL | TAP binding protein like | NM_001351355.2 | 71.8% | 71.3% | (many diffs) |
| 6 | human | 55080 | TAPBPL | TAP binding protein like | XM_017019545.1 | 71.8% | 71.3% | (many diffs) |
| 7 | human | 55080 | TAPBPL | TAP binding protein like | XM_017019546.2 | 71.8% | 71.3% | (many diffs) |
| 8 | human | 55080 | TAPBPL | TAP binding protein like | NR_147128.2 | 69.1% | (many diffs) | |
| 9 | human | 55080 | TAPBPL | TAP binding protein like | NR_147129.2 | 67.9% | (many diffs) | |
| 10 | human | 55080 | TAPBPL | TAP binding protein like | XR_001748781.2 | 63.2% | (many diffs) | |
| 11 | human | 55080 | TAPBPL | TAP binding protein like | NR_147127.2 | 62.9% | (many diffs) | |
| 12 | human | 55080 | TAPBPL | TAP binding protein like | XR_002957344.1 | 57.4% | (many diffs) | |
| 13 | human | 55080 | TAPBPL | TAP binding protein like | XR_001748778.2 | 42.5% | (many diffs) | |
| 14 | human | 55080 | TAPBPL | TAP binding protein like | XR_001748777.2 | 42.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1470
- ORF length:
- 1404
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggtatggg cacacaggag ggctggtgcc tgctgctcca gctggctcta tccagagcag 121 cagaaaccaa gccccaccca gcagaggggc agtggcgggc agtggacgtg gtcctagact 181 gtttcctggt gaaggacggt gcgcaccgtg gagctctcgc cagcagtgag gacagggcaa 241 gggcctccct tgtgctgaag caggtgccag tgctggacga tggctccctg gaggacttca 301 ccgatttcca agggggcaca ctggcccaag atgacccacc tattatcttt gaggcctcag 361 tggacctggt ccagattccc caggccgagg ccttgctcca tgctgactgc agtgggaagg 421 aggtgacctg tgagatctcc cgctactttc tccagatgac agagaccact gttaagacag 481 cagcttggtt catggccaac gtgcaggtct ctggaggggg acctagcatc tccttggtga 541 tgaagactcc cagggtcgcc aagaatgagg tgctctggca cccaacgctg aacttgccac 601 tgagccccca ggggactgtg cgaactgcag tggagttcca ggtgatgaca cagacccaat 661 ccctgagctt cctgctgggg tcctcagcct ccttggactg tggcttctcc atggcaccgg 721 gcttggacct catcagtgtg gagtggcgac tgcagcacaa gggcaggggt cagttggtgt 781 acagctggac cgcagggcag gggcaggctg tgcggaaggg cgctaccctg gagcctgcac 841 aactgggcat ggccagggat gcctccctca ccctgcccgg cctcactata caggacgagg 901 ggacctacat ttgccagatc accacctctc tgtaccgagc tcagcagatc atccagctca 961 acatccaagc ttcccctaaa gtacgactga gcttggcaaa cgaagctctg ctgcccaccc 1021 tcatctgcga cattgctggc tattaccctc tggatgtggt ggtgacgtgg acccgagagg 1081 agctgggtgg atccccagcc caagtctctg gtgcctcctt ctccagccTC AGGCAAAGCG 1141 TGGCAGGCAC CTACAGCATC TCCTCCTCTC TCACCGCAGA ACCTGGCTCT GCAGGTGCCA 1201 CTTACACCTG CCAGGTCACA CACATCTCTC TGGAGGAGCC CCTTGGGGCC AGCACCCAGG 1261 TTGTCCCACC AGAGCGGAGA ACAGCCTTGG GAGTCATCTT TGCCAGCAGT CTCTTCCTTC 1321 TTGCACTGAT GTTCCTGGGG CTTCAGAGAC GGCAAGCACC TACAGGACTT GGGCTGCTTC 1381 AGGCTGAACG CTGGGAGACC ACTTCCTGTG CTGACACACA GAGCTCCCAT CTCCATGAAG 1441 ACCGCACAGC GCGTGTAAGC CAGCCAGCTG CCAACTTTCT TGTACAAAGT GGTTGATATC 1501 GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG 1561 TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACTTGTAT 1621 GTGCCGAACT ACTTACAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg 1681 aaagatt