Transcript: Human XR_001748778.2

PREDICTED: Homo sapiens TAP binding protein like (TAPBPL), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TAPBPL (55080)
Length:
3270
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001748778.2
NBCI Gene record:
TAPBPL (55080)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001748778.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000060730 CCCAAGATGACCCACCTATTA pLKO.1 437 3UTR 100% 13.200 18.480 N TAPBPL n/a
2 TRCN0000419736 CGACATGAGACTACTAGAAAG pLKO_005 1592 3UTR 100% 10.800 15.120 N TAPBPL n/a
3 TRCN0000432611 CAGCCTTGGGAGTCATCTTTG pLKO_005 1394 3UTR 100% 10.800 8.640 N TAPBPL n/a
4 TRCN0000435340 GGTGATGACACAGACCCAATC pLKO_005 753 3UTR 100% 6.000 4.200 N TAPBPL n/a
5 TRCN0000434785 GTACGACTGAGCTTGGCAAAC pLKO_005 1093 3UTR 100% 6.000 4.200 N TAPBPL n/a
6 TRCN0000060732 CTTCCTTCTTGCACTGATGTT pLKO.1 1425 3UTR 100% 4.950 3.465 N TAPBPL n/a
7 TRCN0000060728 CCACTGTTAAGACAGCAGCTT pLKO.1 578 3UTR 100% 2.640 1.848 N TAPBPL n/a
8 TRCN0000060729 GCTGGCTATTACCCTCTGGAT pLKO.1 1147 3UTR 100% 2.640 1.848 N TAPBPL n/a
9 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 2829 3UTR 100% 4.950 2.475 Y CFLAR n/a
10 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 2829 3UTR 100% 4.950 2.475 Y C19orf31 n/a
11 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 2827 3UTR 100% 4.950 2.475 Y ERN2 n/a
12 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 2827 3UTR 100% 4.950 2.475 Y P3H4 n/a
13 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 2827 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001748778.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14185 pDONR223 99.2% 42.5% None (many diffs) n/a
2 ccsbBroad304_14185 pLX_304 0% 42.5% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000469500 CGCCCGTTATACCAGGTGCGATGT pLX_317 24.6% 42.5% V5 (not translated due to prior stop codon) (many diffs) n/a
4 TRCN0000479611 CTTGTATGTGCCGAACTACTTACA pLX_317 24.6% 42.5% V5 (not translated due to prior stop codon) (many diffs) n/a
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