Construct: ORF TRCN0000479612
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011351.1_s317c1
- Derived from:
- ccsbBroadEn_11007
- DNA Barcode:
- CTCAAACGATGGACCAATGACCCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OAZ1 (4946)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479612
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4946 | OAZ1 | ornithine decarboxylase ant... | NM_004152.3 | 29.7% | 100% | 205_685del |
| 2 | human | 4946 | OAZ1 | ornithine decarboxylase ant... | NM_001301020.1 | 28.9% | 97% | 144_145insAGTTCC;199_679del |
| 3 | mouse | 18245 | Oaz1 | ornithine decarboxylase ant... | NM_008753.4 | 27.1% | 89.7% | (many diffs) |
| 4 | mouse | 18245 | Oaz1 | ornithine decarboxylase ant... | NM_001301034.1 | 26.3% | 86.7% | (many diffs) |
| 5 | mouse | 100041965 | Oaz1-ps | ornithine decarboxylase ant... | NR_027656.1 | 19.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 297
- ORF length:
- 204
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGGTGAA ATCCTCCCTG CAGCGGATCC 121 TCAATAGCCA CTGCTTCGCC AGAGAGAAGG AAGGGGATAA ACCCAGCGCC ACCATCCACG 181 CCAGCCGCAC CATGCCGCTC CTAAGCCTGC ACAGCCGCGG CGGCAGCAGC AGTGAGAGTT 241 CCAGGGTCTC CCTCCACTGC TGTAGTAACC CGGGTCCGGG GCCTCGGTGG TGCTCCTTGC 301 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 361 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 421 ATATATCTTG TGGAAAGGAC GACTCAAACG ATGGACCAAT GACCCCACGC GTTAAGTCga 481 caatcaacct ctggattaca aaatttgtga aagatt