Construct: ORF TRCN0000479659

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012532.1_s317c1
Derived from:
ccsbBroadEn_03926
DNA Barcode:
GGATCTGAGCGCCTTTTTGGCCTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC39A8 (64116)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479659
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64116 SLC39A8 solute carrier family 39 me... NM_001135146.2 100% 100%
2 human 64116 SLC39A8 solute carrier family 39 me... NM_022154.5 100% 100%
3 human 64116 SLC39A8 solute carrier family 39 me... XM_005263177.2 100% 100%
4 human 64116 SLC39A8 solute carrier family 39 me... NM_001135147.1 93.9% 92.8% (many diffs)
5 human 64116 SLC39A8 solute carrier family 39 me... XM_024454184.1 92.1% 89.5% (many diffs)
6 human 64116 SLC39A8 solute carrier family 39 me... NM_001135148.1 84.6% 84.3% 1_1delAins205;6_7insTT;11_15delACGCT
7 human 64116 SLC39A8 solute carrier family 39 me... XM_017008541.1 84.6% 84.3% 1_1delAins205;6_7insTT;11_15delACGCT
8 human 64116 SLC39A8 solute carrier family 39 me... XM_024454183.1 62.9% 62.1% (many diffs)
9 mouse 67547 Slc39a8 solute carrier family 39 (m... NM_001135149.1 83.8% 88.9% (many diffs)
10 mouse 67547 Slc39a8 solute carrier family 39 (m... NM_001135150.1 83.8% 88.9% (many diffs)
11 mouse 67547 Slc39a8 solute carrier family 39 (m... NM_026228.5 83.8% 88.9% (many diffs)
12 mouse 67547 Slc39a8 solute carrier family 39 (m... XM_006501934.2 83.8% 88.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1446
ORF length:
1380
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cccgggtcgc gcggtggccg ggctcctgtt gctggcggcc gccggcctcg
121gaggagtggc ggaggggcca gggctagcct tcagcgagga tgtgctgagc gtgttcggcg
181cgaatctgag cctgtcggcg gcgcagctcc agcacttgct ggagcagatg ggagccgcct
241cccgcgtggg cgtcccggag cctggccagc tgcacttcaa ccagtgttta actgctgaag
301agatcttttc ccttcatggc ttttcaaatg ctacccaaat aaccagctcc aaattctctg
361tcatctgtcc agcagtctta cagcaattga actttcaccc atgtgaggat cggcccaagc
421acaaaacaag accaagtcat tcagaagttt ggggatatgg attcctgtca gtgacgatta
481ttaatctggc atctctcctc ggattgattt tgactccact gataaagaaa tcttatttcc
541caaagatttt gacctttttt gtggggctgg ctattgggac tcttttttca aatgcaattt
601tccaacttat tccagaggca tttggatttg atcccaaagt cgacagttat gttgagaagg
661cagttgctgt gtttggtgga ttttacctac ttttcttttt tgaaagaatg ctaaagatgt
721tattaaagac atatggtcag aatggtcata cccactttgg aaatgataac tttggtcctc
781aagaaaaaac tcatcaacct aaagcattac ctgccatcaa tggtgtgaca tgctatgcaa
841atcctgctgt cacagaagct aatggacata tccattttga taatgtcagt gtggtatctc
901tacaggatgg aaaaaaagag ccaagttcat gtacctgttt gaaggggccc aaactgtcag
961aaatagggac gattgcctgg atgataacgc tctgcgatgc cctccacaat ttcatcgatg
1021gcctggcgat tggggcttcc tgcaccttgt ctctccttca gggactcagt acttccatag
1081caaTCCTATG TGAGGAGTTT CCCCACGAGT TAGGAGACTT TGTGATCCTA CTCAATGCAG
1141GGATGAGCAC TCGACAAGCC TTGCTATTCA ACTTCCTTTC TGCATGTTCC TGCTATGTTG
1201GGCTAGCTTT TGGCATTTTG GTGGGCAACA ATTTCGCTCC AAATATTATA TTTGCACTTG
1261CTGGAGGCAT GTTCCTCTAT ATTTCTCTGG CAGATATGTT TCCAGAGATG AATGATATGC
1321TGAGAGAAAA GGTAACTGGA AGAAAAACCG ATTTCACCTT CTTCATGATT CAGAATGCTG
1381GAATGTTAAC TGGATTCACA GCCATTCTAC TCATTACCTT GTATGCAGGA GAAATCGAAT
1441TGGAGTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1501TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1561CTTGGCTTTA TATATCTTGT GGAAAGGACG AGGATCTGAG CGCCTTTTTG GCCTCACGCG
1621TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)