Construct: ORF TRCN0000479715

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003944.1_s317c1
Derived from:
ccsbBroadEn_05035
DNA Barcode:
CGTACGGTCAGCTAATTACAACCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AIFM3 (150209)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479715
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 150209 AIFM3 apoptosis inducing factor m... NM_001018060.3 100% 100%
2 human 150209 AIFM3 apoptosis inducing factor m... NM_001146288.2 99% 99% 29_46del
3 human 150209 AIFM3 apoptosis inducing factor m... NM_144704.3 98.8% 98.8% 1757_1777del
4 human 150209 AIFM3 apoptosis inducing factor m... NR_027464.2 72.8% 1_189del;434_435ins110;1874_2203del
5 mouse 72168 Aifm3 apoptosis-inducing factor, ... NM_175178.4 87.9% 96.1% (many diffs)
6 mouse 72168 Aifm3 apoptosis-inducing factor, ... NM_001291070.1 86.9% 95% (many diffs)
7 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_006522592.3 86.9% 95% (many diffs)
8 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_006522590.3 85.2% 92.1% (many diffs)
9 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_006522591.3 85.2% 92.1% (many diffs)
10 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_006522593.3 83% 90% (many diffs)
11 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_006522594.3 80% 84.7% (many diffs)
12 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_006522595.3 78.7% 85.2% (many diffs)
13 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_006522596.3 78.7% 85.2% (many diffs)
14 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_017317135.1 77.5% 84.1% (many diffs)
15 mouse 72168 Aifm3 apoptosis-inducing factor, ... XM_017317136.1 73.4% 79.6% (many diffs)
16 mouse 72168 Aifm3 apoptosis-inducing factor, ... XR_001781867.1 41.4% (many diffs)
17 mouse 72168 Aifm3 apoptosis-inducing factor, ... XR_001781868.1 39.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1860
ORF length:
1794
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg cggctgcttc tccaaaccca aaccagtgga gctcaagatc gaggtggtgc
121tgcctgagaa ggagcgaggc aaggaggagc tgtcggccag tgggaagggc agcccccggg
181cctaccaggg caatggcacg gcccgccact tccacacgga ggagcgcctg tccacccctc
241acccctaccc cagccctcag gattgcgtgg aggctgctgt ctgccacgtc aaggacctcg
301agaatggcca gatgcgggaa gtggagctgg gctgggggaa ggtgttgctg gtgaaggaca
361atggggagtt ccacgccctg ggccataagt gtccgcacta cggcgcaccc ctggtgaaag
421gcgttctgtc ccgtggtcgg gtgcgctgcc cctggcacgg cgcctgcttc aacatcagca
481ctggggacct ggaggacttc cctggcctgg acagtctaca caagttccag gtgaagattg
541agaaggagaa ggtgtacgtc cgggccagca agcaggccct acagctgcag cgaaggacca
601aggtgatggc caagtgtatc tctccaagtg ctgggtacag cagtagcacc aatgtgctca
661ttgtgggtgc aggtgcagct ggcctggtgt gtgcagagac actgcggcag gagggcttct
721ccgaccggat cgtcctgtgc acgctagacc ggcaccttcc ctacgaccgt cccaagctca
781gcaagtccct ggacacacag cctgagcagc tggccctgag gcccaaggag tttttccgag
841cctatggcat cgaggtgctc accgaggctc aggtggtcac agtggacgtg agaactaaga
901aggtcgtgtt caaggatggc ttcaagctgg agtacagcaa gctgctgctg gcaccaggga
961gcagccccaa gactctgagc tgcaaaggca aagaagtgga gaacgtgttc actatccgga
1021cgccagagga tgccaatcgc gtggtgaggc tggcccgagg ccgcaacgtg gtcgtcgtgg
1081gagccggctt cctggggatg gaggtggccg cttacctgac ggagaaggcc cactctgtgt
1141ctgtggtgga gctggaggag acgcccttca ggaggttcct gggggagcgc gtgggtcgtg
1201ccctcatgaa gatgtttgag aacaaccggg tgaagttcta catgcagacg gaggtgtctg
1261agctgcgggg ccaggaggga aagctgaagg aggttgtgct gaagagcagc aaggtcgtgc
1321gggctgacgt ctgcgtggtg ggcattggtg cagtgcccgc cacaggcttc ctgaggcaaa
1381gcggcatcgg tttggattcc cgaggcttca tccctgtcaa caagatgatg cagaccaatg
1441tcccaggcgt gtttgcagct ggcgatgctg tcaccttccc ccttgcctgg aggaacaacc
1501gcaaagtgaa cattccacat tggcagatgg ctcatgcTCA GGGGCGCGTG GCAGCCCAGA
1561ACATGTTGGC GCAGGAGGCG GAGATGAGCA CTGTGCCCTA CCTCTGGACC GCCATGTTTG
1621GCAAGAGCCT GCGCTACGCG GGCTACGGAG AAGGCTTCGA CGACGTCATC ATCCAGGGGG
1681ATCTGGAGGA GCTGAAGTTT GTGGCTTTTT ACACTAAAGG CGACGAGGTG ATCGCCGTGG
1741CCAGCATGAA CTACGATCCC ATTGTGTCCA AGGTCGCTGA GGTGCTGGCC TCAGGCCGTG
1801CCATCCGGAA GCGGGAGGTG GAGACTGGCG ACATGTCCTG GCTTACGGGG AAAGGATCCT
1861GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1921GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1981TTTATATATC TTGTGGAAAG GACGACGTAC GGTCAGCTAA TTACAACCCA CGCGTTAAGT
2041Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)