Construct: ORF TRCN0000479814

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011967.1_s317c1
Derived from:
ccsbBroadEn_03484
DNA Barcode:
TGAGAATATTCACCACGAAGATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHCHD3 (54927)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479814
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54927 CHCHD3 coiled-coil-helix-coiled-co... NM_017812.4 100% 100%
2 human 54927 CHCHD3 coiled-coil-helix-coiled-co... NM_001317177.1 97.8% 97.8% 370_384del
3 human 54927 CHCHD3 coiled-coil-helix-coiled-co... NM_001317178.1 55.2% 55.4% (many diffs)
4 human 54927 CHCHD3 coiled-coil-helix-coiled-co... NR_133671.1 32.6% (many diffs)
5 mouse 66075 Chchd3 coiled-coil-helix-coiled-co... NM_025336.1 87.5% 90.3% (many diffs)
6 mouse 66075 Chchd3 coiled-coil-helix-coiled-co... XM_006506467.3 85.6% 88.3% (many diffs)
7 mouse 66075 Chchd3 coiled-coil-helix-coiled-co... XM_006506468.3 56.5% 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
747
ORF length:
681
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg tgggaccacc agcacccgcc gggtcacctt cgaggcggac gagaatgaga
121acatcaccgt ggtgaagggc atccggcttt cggaaaatgt gattgatcga atgaaggaat
181cctctccatc tggttcgaag tctcagcggt attctggtgc ttatggtgcc tcagtttctg
241atgaagaatt gaaaagaaga gtagctgagg agctggcatt ggagcaagcc aagaaagaat
301ccgaagatca gaaacgacta aagcaagcca aagagctgga ccgagagagg gctgctgcca
361atgagcagtt aaccagagcc atccTTCGGG AGAGGATATG TAGCGAGGAG GAACGCGCTA
421AGGCAAAGCA CCTGGCTAGG CAGCTGGAAG AGAAAGACCG AGTGCTAAAG AAGCAGGATG
481CATTCTACAA AGAACAGCTG GCTAGACTGG AGGAGAGGAG CTCAGAGTTC TACAGAGTCA
541CCACTGAACA ATATCAGAAA GCTGCTGAAG AGGTGGAAGC AAAGTTCAAG CGATATGAGT
601CTCATCCAGT CTGTGCTGAT CTGCAGGCCA AAATTCTTCA GTGTTACCGT GAGAACACCC
661ACCAGACCCT CAAATGCTCC GCTCTGGCCA CCCAGTATAT GCACTGTGTC AATCATGCCA
721AACAGAGCAT GCTTGAGAAG GGAGGATACC CAACTTTCTT GTACAAAGTG GTTGATATCG
781GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
841AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATGAGAATA
901TTCACCACGA AGATTGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
961aagatt

Download FASTA (ORF) (Full)