Construct: ORF TRCN0000479956
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008658.1_s317c1
- Derived from:
- ccsbBroadEn_05388
- DNA Barcode:
- GTAACGCGGAAGTATATAACCACT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STARD7-AS1 (285033)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479956
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285033 | STARD7-AS1 | STARD7 antisense RNA 1 | NR_046322.1 | 14.6% | 1_1370del;1734_2484del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 432
- ORF length:
- 363
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaaaagtgtt tacaatattc gtcctcttac tcctCAGTAT GTGAGACTGT 121 TCCTCGTAGC AGGTAATTTC TTCCGAATTC AAAAACTCCT CATGGAAGCA TCTGTTTTTG 181 TCATCAAGGA GGGGGCTGTA TGTGGAATTG CAAGGCCAAA GACATCTCGG GTCAACTCTT 241 CTCAGGACCA GATCCAAGTC GCCAGTGAGA ACACACATTC AGGCAGCCTC CACCAGCGCC 301 CTGCCTCAGG AGCGAGGCTC CCTGCTTCAT GTGGGCAAGA GCTGCCCTTG TTTTCCCAGC 361 GGGCAGTTGG GGGTCTGGAG CCTAGGAAGC AAAGTGAAGC ACACACTCCT GCTTCCTTCC 421 TTCCCTGCAG TTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 481 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG CCCGTAACTT GAAAGTATTT 541 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGTA ACGCGGAAGT ATATAACCAC 601 TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t