Construct: ORF TRCN0000480127

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010878.1_s317c1
Derived from:
ccsbBroadEn_14235
DNA Barcode:
AGGCGTCCGTGCTTCAGTTAAATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CACHD1 (57685)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480127
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57685 CACHD1 cache domain containing 1 NM_001293274.1 99.8% 99.7% 353T>C;597C>A;1245C>A
2 human 57685 CACHD1 cache domain containing 1 XM_011541863.1 85.7% 85.6% (many diffs)
3 human 57685 CACHD1 cache domain containing 1 XM_011541862.1 84.2% 84.1% (many diffs)
4 human 57685 CACHD1 cache domain containing 1 NM_020925.4 76.6% 76.6% (many diffs)
5 mouse 320508 Cachd1 cache domain containing 1 NM_198037.1 68.2% 73.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3003
ORF length:
2934
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtccaccttt gttagcagcg tgaagtcttc agacagtcct acccagcacg
121cagtgggatt ccaaaaggca tttcagctga ttcgaagtac aaacaataac acaaagttcc
181aagcaaatac agacatggtc atcatttacc tgtcagctgg cattacatca aaggactctt
241cggaagaaga taaaaaagcg actctccaag tcatcaatga agaaaatagc tttctaaaca
301actctgtaat gattctcacc tatgccctca tgaacgatgg ggtgactggt ttgaaagagc
361tggcttttct gagggatcta gctgaacaga attcagggaa gtacggtgtg ccagaccgga
421cggccttgcc tgtgattaag ggcagcatga tggtgctgaa tcagttgagc aacctggaga
481ccacagtggg caggttctac acaaaccttc ccaaccggat gattgatgaa gccgtcttca
541gcctgccctt ctctgatgag atgggagatg gtttgataat gactgtgagt aaaccctgtt
601attttggaaa cctacttctg ggaattgtag gtgtggacgt gaatctggct tacattcttg
661aagaagtgac gtattaccaa gactctttgg cttcctatac ttttctcata gacgacaaag
721gatatacact tatgcaccca tctcttacca ggccatattt attgtcagag cccccacttc
781atactgacat catacattat gaaaatattc caaaatttga attagttcgg caaaatatcc
841taagcctccc tctgggcagc cagattatcg cagtccctgt gaactcatcc ctgtcttggc
901acataaacaa gctgagagaa actggaaagg aagcctacaa tgttagctat gcctggaaga
961tggtacaaga cacttccttt attctgtgta ttgtggtgat acaaccagaa atacctgtga
1021aacaactgaa gaacctcaac actgttccca gcagcaagct gctgtaccac cggctggatc
1081tccttggcca gcccagtgct tgcctccact tcaaacagct ggcaacccta gaaagtccca
1141ccatcatgct gtctgctggc agcttttcct ccccctatga gcacctcagc cagccagaga
1201caaagcgcat ggtagagcac tacaccgcct atctcagcga caacacccgc ctcattgcta
1261acccgggcct caaattctct gtcagaaatg aagtaatggc taccagccac gtaacagatg
1321aatggatgac acaaatggaa atgagtagcc tgaacactta cattgtccgc cgttacatag
1381caacacccaa tggcgtcctc agaatttatc ctggttccct catggacaaa gcatttgatc
1441ccactaggag acaatggtat ctccatgcag tagctaatcc agggttgatt tctttgactg
1501gtccttactt agatgttgga ggagctggtt atgttgtgac aatcagtcac acaattcatt
1561catccagtac acagctgtct tctgggcaca ctgtggctgt gatgggcatt gacttcacac
1621tcagatactt ctacaaagtt ctgatggacc tattacctgt ctgtaaccaa gatggtggca
1681acaaaataag gtgcttcata atggaggaca ggggttatct ggtggcgcac ccgactctca
1741tcgaccccaa aggacatgca cctgtggagc agcagcacat cacccacaag gagcccctgg
1801tagcaaatga tatcctcaac caccccaact ttgtaaagaa aaacctgtgc aacagcttca
1861gtgacagaac ggtccagagg ttttataaat tcaacaccag ccttgcgggg gatttgacga
1921accttgtgca tggcagccac tgttccaaat acagattagc aaggatccca ggaaccaacg
1981cgtttgttgg cattgtcaac gaaacctgcg actctcttgc cttctgtgcc tgcagcatgg
2041tggaccgact ctgtctcaac tgtcaccgaa tggaacaaaa tgaatgtgaa tgtccttgtg
2101agtgccctct agaggtcaat gagtgcactg gcaacctcac caatgcagag aaccgaaacc
2161ccagctgcga ggtccaccag gagccggtga catacacagc tattgaccct ggcctgcaag
2221atgctcttca ccagtgtgtc aacagcaggt gcagtcagag gctggaaagt ggggactgtt
2281ttggggtgct ggattgtgaa tggtgcatgg tggacagtga tggaaagact cacctggaca
2341aaccctactg tgccccccag aaagaatgct tcggggggat tgtgggagcc aaaagtccct
2401acgttgatga catgggagca ataggtgatg aggtgatcac attaaacatg attaaaagcg
2461cccctgtggg tcctgtggct ggagggatca tgggatgcat catggtcttg gtcctggcgg
2521tgtatgccta ccgccaccag attcatcgcc ggagccatca gcatatgtct cctcttgctg
2581cccaagaaat gtcagtgcgt atgtccaacc tggagaatga cagagatgaa agggacgacg
2641acagccacga agacagaggc atcaTCAGCA ACACTCGGTT TATAGCTGCG GTCATCGAAC
2701GACATGCACA CAGTCCAGAA AGAAGGCGCC GCTACTGGGG TCGATCAGGA ACAGAAAGTG
2761ATCATGGTTA CAGCACCATG AGCCCACAGG AGGACAGTGA AAATCCTCCA TGCAACAATG
2821ACCCCTTGTC AGCCGGGGTC GATGTGGGAA ACCATGATGA GGACTTAGAC CTGGATACCC
2881CCCCTCAGAC TGCTGCCCTA CTAAGTCACA AGTTCCACCA CTACCGGTCA CACCACCCTA
2941CACTTCATCA TAGCCACCAC TTACAGGCGG CCGTCACGGT ACACACTGTC GATGCAGAAT
3001GCTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
3061TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
3121GGCTTTATAT ATCTTGTGGA AAGGACGAAG GCGTCCGTGC TTCAGTTAAA TCACGCGTTA
3181AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)