Construct: ORF TRCN0000480316

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016228.2_s317c1
Derived from:
ccsbBroadEn_15354
DNA Barcode:
TGGCCCATCAAACGAGCCTTATTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AKR1B1 (231)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480316
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 231 AKR1B1 aldo-keto reductase family ... NM_001628.4 99.7% 99.6% 6A>T;424T>C
2 human 231 AKR1B1 aldo-keto reductase family ... NM_001346142.1 54.4% 54.4% 0_1ins432
3 human 231 AKR1B1 aldo-keto reductase family ... XM_005250234.3 54.4% 54.4% 0_1ins432
4 human 231 AKR1B1 aldo-keto reductase family ... XM_024446695.1 54.4% 54.4% 0_1ins432
5 human 231 AKR1B1 aldo-keto reductase family ... NR_144376.1 45.5% (many diffs)
6 mouse 11677 Akr1b3 aldo-keto reductase family ... NM_009658.3 85.6% 85.1% (many diffs)
7 mouse 626009 Gm6644 predicted gene 6644; Akr1b3... NR_037965.1 59.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1014
ORF length:
948
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tagccgtctc ctgctcaaca acggcgccaa gatgcccatc ctggggttgg
121gtacctggaa gtcccctcca gggcaggtga ctgaggccgt gaaggtggcc attgacgtcg
181ggtaccgcca catcgactgt gcccatgtgt accagaatga gaatgaggtg ggggtggcca
241ttcaggagaa gctcagggag caggtggtga agcgtgagga gctcttcatc gtcagcaagc
301tgtggtgcac gtaccatgag aagggcctgg tgaaaggagc ctgccagaag acactcagcg
361acctgaagct ggactacctg gacctctacc ttattcactg gccgactggc tttaagcctg
421ggaaggaatt tttcccattg gatgagtcgg gcaatgtggt tcccagtgac accaacattc
481tggacacgcg ggcggccatg gaagagctgg tggatgaagg gctggtgaaa gctattggca
541tctccaactt caaccaTCTC CAGGTGGAGA TGATCTTAAA CAAACCTGGC TTGAAGTATA
601AGCCTGCAGT TAACCAGATT GAGTGCCACC CATATCTCAC TCAGGAGAAG TTAATCCAGT
661ACTGCCAGTC CAAAGGCATC GTGGTGACCG CCTACAGCCC CCTCGGCTCT CCTGACAGGC
721CCTGGGCCAA GCCCGAGGAC CCTTCTCTCC TGGAGGATCC CAGGATCAAG GCGATCGCAG
781CCAAGCACAA TAAAACTACA GCCCAGGTCC TGATCCGGTT CCCCATGCAG AGGAACTTGG
841TGGTGATCCC CAAGTCTGTG ACACCAGAAC GCATTGCTGA GAACTTTAAG GTCTTTGACT
901TTGAACTGAG CAGCCAGGAT ATGACCACCT TACTCAGCTA CAACAGGAAC TGGAGGGTCT
961GTGCCTTGTT GAGCTGTACC TCCCACAAGG ATTACCCCTT CCATGAAGAG TTTCGCCCAA
1021CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1081ATTCTACGTA GTAATGAACT AGCCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1141TATCTTGTGG AAAGGACGAT GGCCCATCAA ACGAGCCTTA TTTACGCGTT AAGTCgacaa
1201tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)