Construct: ORF TRCN0000480325

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011491.2_s317c1
Derived from:
ccsbBroadEn_08681
DNA Barcode:
CATAAGCAAGGTCTTTGGAAAGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COQ8A (56997)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480325
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56997 COQ8A coenzyme Q8A NM_020247.5 99.9% 100% 1185C>T
2 human 56997 COQ8A coenzyme Q8A XM_005273201.1 99.9% 100% 1185C>T
3 human 56997 COQ8A coenzyme Q8A XM_011544238.1 99.9% 100% 1185C>T
4 human 56997 COQ8A coenzyme Q8A XM_011544239.2 99.9% 100% 1185C>T
5 human 56997 COQ8A coenzyme Q8A XM_011544241.2 99.9% 100% 1185C>T
6 human 56997 COQ8A coenzyme Q8A XM_017001852.1 99.9% 100% 1185C>T
7 human 56997 COQ8A coenzyme Q8A XM_024448517.1 99.9% 100% 1185C>T
8 human 56997 COQ8A coenzyme Q8A XM_024448518.1 99.9% 100% 1185C>T
9 mouse 67426 Coq8a coenzyme Q8A NM_001163290.1 83.4% 86.5% (many diffs)
10 mouse 67426 Coq8a coenzyme Q8A NM_023341.3 83.4% 86.5% (many diffs)
11 mouse 67426 Coq8a coenzyme Q8A XM_006496961.2 83.4% 86.5% (many diffs)
12 mouse 67426 Coq8a coenzyme Q8A XM_006496962.2 83.4% 86.5% (many diffs)
13 mouse 67426 Coq8a coenzyme Q8A XM_006496963.3 77.8% 79.9% (many diffs)
14 mouse 67426 Coq8a coenzyme Q8A XM_011238855.2 67.2% 71.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2007
ORF length:
1941
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tgccatattg ggagacacca tcatggtggc taaaggcctt gtcaagctga
121cccaggcggc cgtggaaacc cacctgcagc acttgggcat cggaggggag ctgatcatgg
181cggccagggc cctgcagtcc acggctgtgg agcagattgg catgttcttg gggaaggtgc
241agggtcagga taaacatgaa gaatattttg ctgagaactt cggcggccca gaaggggagt
301tccacttctc agtcccgcat gcagccggag cctccacaga cttctcttca gcctccgctc
361ccgaccagtc agcgccccca tccctgggtc atgcccacag cgagggccca gctcctgcct
421acgtggccag tggacccttt agagaagccg ggttccccgg ccaggcctcc tcccctctgg
481gcagggccaa cgggaggctc tttgcaaacc ccagagactc attctctgcc atgggctttc
541agcgaaggtt cttccaccag gaccaatccc ctgttggggg cctcacagcc gaggacattg
601agaaggcccg gcaggctaag gctcgccccg agaacaagca gcacaaacag acgctcagcg
661agcatgcccg ggagcggaag gtgcctgtga cgaggattgg ccggctggcc aacttcggag
721gtctggccgt gggcctgggc ttcggggcac tggcagaggt cgccaagaag agcctgcgct
781ccgaggaccc ctcagggaag aaggccgtgc tgggttccag tcctttcctg tccgaggcca
841atgcagagcg gatcgtgcgc acgctctgca aggtgcgtgg tgcggcactc aagctgggcc
901agatgctgag catccaggat gatgccttta tcaaccccca cctggctaag atcttcgagc
961gggtgcggca gagcgcggac ttcatgccac tgaagcagat gatgaaaact ctcaacaacg
1021acctgggccc caactggcgg gacaagttgg aatacttcga ggagcggccc ttcgccgccg
1081catccattgg gcaggtgcac ttggcccgaa tgaagggcgg ccgcgaggtg gccatgaaga
1141tccagtaccc tggcgtggcc cagagcatca acagtgatgt caacaacctc atggccgtgt
1201tgaacatgag caacatgctt ccagaaggcc tgttccccga gcacctgatt gacgtgctga
1261ggcgggagct ggccctggag tgtgactacc agcgagaggc cgcctgtgcc cgcaagttca
1321gggacctgct gaagggccac cccttcttct atgtgcctga gattgtggat gagctctgca
1381gcccacatgt gctgaccaca gagctggtgt ctggcttccc cctggaccag gccgaagggc
1441tcagccagga gattcggaac gagatctgct acaacatcct ggttctgtgc ctgagggagc
1501tgttcgagtt ccacttcatg caaacagacc ccaactggtc caacttcttc tatgaccccc
1561agcagcacaa ggtggctcTT TTGGATTTTG GGGCAACGCG GGAATATGAC AGATCCTTCA
1621CCGACCTCTA CATTCAGATC ATCAGGGCTG CTGCCGACAG GGACAGGGAG ACTGTGCGGG
1681CGAAATCCAT AGAGATGAAG TTCCTCACCG GCTACGAGGT CAAGGTCATG GAAGACGCCC
1741ACTTGGATGC CATCCTCATC CTGGGGGAGG CCTTCGCCTC TGATGAGCCT TTTGATTTTG
1801GCACTCAGAG CACCACCGAG AAGATCCACA ACCTGATTCC CGTCATGCTG AGGCACCGTC
1861TCGTCCCCCC ACCCGAGGAA ACCTACTCCC TGCACAGGAA GATGGGGGGC TCCTTCCTCA
1921TCTGCTCCAA GCTGAAGGCC CGCTTCCCCT GCAAGGCCAT GTTCGAGGAG GCCTACAGCA
1981ACTACTGCAA GAGGCAGGCC CAGCAGTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
2041GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
2101AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACATAAGCA
2161AGGTCTTTGG AAAGTCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
2221aagatt

Download FASTA (ORF) (Full)