Construct: ORF TRCN0000480402

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012163.1_s317c1
Derived from:
ccsbBroadEn_01584
DNA Barcode:
ACCGATTTTATCTCGTCTTTTTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPARC (6678)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480402
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6678 SPARC secreted protein acidic and... NM_003118.4 100% 100%
2 human 6678 SPARC secreted protein acidic and... NM_001309443.2 99.6% 99.6% 57_58insCAG
3 human 6678 SPARC secreted protein acidic and... NM_001309444.2 88.4% 86.5% 883_884insAG;908_1023del
4 mouse 20692 Sparc secreted acidic cysteine ri... NM_001290817.1 89.3% 92.4% (many diffs)
5 mouse 20692 Sparc secreted acidic cysteine ri... NM_009242.5 89.2% 92.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
975
ORF length:
909
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag ggcctggatc ttctttctcc tttgcctggc cgggagggcc ttggcagccc
121ctcagcaaga agccctgcct gatgagacag aggtggtgga agaaactgtg gcagaggtga
181ctgaggtatc tgtgggagct aatcctgtcc aggtggaagt aggagaattt gatgatggtg
241cagaggaaac cgaagaggag gtggtggcgg aaaatccctg ccagaaccac cactgcaaac
301acggcaaggt gtgcgagctg gatgagaaca acacccccat gtgcgtgtgc caggacccca
361ccagctgccc agcccccatt ggcgagtttg agaaggtgtg cagcaatgac aacaagacct
421tcgactcttc ctgccacttc tttgccacaa agtgcaccct ggagggcacc aagaagggcc
481acaagctcca cctggactac atcgggcctt gcaaatacat ccccccttgc ctggactctg
541agctgaccga attccccctg cgcatgcggg actggctcaa gaacgtcctg gTCACCCTGT
601ATGAGAGGGA TGAGGACAAC AACCTTCTGA CTGAGAAGCA GAAGCTGCGG GTGAAGAAGA
661TCCATGAGAA TGAGAAGCGC CTGGAGGCAG GAGACCACCC CGTGGAGCTG CTGGCCCGGG
721ACTTCGAGAA GAACTATAAC ATGTACATCT TCCCTGTACA CTGGCAGTTC GGCCAGCTGG
781ACCAGCACCC CATTGACGGG TACCTCTCCC ACACCGAGCT GGCTCCACTG CGTGCTCCCC
841TCATCCCCAT GGAGCATTGC ACCACCCGCT TTTTCGAGAC CTGTGACCTG GACAATGACA
901AGTACATCGC CCTGGATGAG TGGGCCGGCT GCTTCGGCAT CAAGCAGAAG GATATCGACA
961AGGATCTTGT GATCTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1021CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1081TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ACCGATTTTA TCTCGTCTTT
1141TTTCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)