Construct: ORF TRCN0000480460

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015277.2_s317c1
Derived from:
ccsbBroadEn_12078
DNA Barcode:
CAAGATGAATGATGGTTTCAATAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF111 (54778)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480460
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54778 RNF111 ring finger protein 111 NM_001270529.2 99.9% 99.8% 27C>G;444A>G
2 human 54778 RNF111 ring finger protein 111 XM_017022343.1 99.9% 99.8% 27C>G;444A>G
3 human 54778 RNF111 ring finger protein 111 NM_017610.8 99.8% 99.7% 27C>G;444A>G;1684_1686delCAG
4 human 54778 RNF111 ring finger protein 111 XM_017022342.1 99.8% 99.7% 27C>G;444A>G;1684_1686delCAG
5 human 54778 RNF111 ring finger protein 111 XM_017022340.2 99.1% 99% 27C>G;444A>G;2735_2758del
6 human 54778 RNF111 ring finger protein 111 XM_017022341.1 99.1% 99% 27C>G;444A>G;2735_2758del
7 human 54778 RNF111 ring finger protein 111 NM_001270530.1 99% 98.9% (many diffs)
8 human 54778 RNF111 ring finger protein 111 XM_017022338.2 99% 98.9% (many diffs)
9 human 54778 RNF111 ring finger protein 111 XM_017022339.2 99% 98.9% 27C>G;444A>G;2295_2321del
10 human 54778 RNF111 ring finger protein 111 NM_001270528.2 98.9% 98.8% (many diffs)
11 human 54778 RNF111 ring finger protein 111 XM_017022337.2 98.2% 98.2% (many diffs)
12 human 54778 RNF111 ring finger protein 111 NM_001330331.2 98.1% 98.1% (many diffs)
13 human 54778 RNF111 ring finger protein 111 XM_006720579.3 98.1% 98.1% (many diffs)
14 human 54778 RNF111 ring finger protein 111 XM_017022336.1 97.5% 97.5% (many diffs)
15 human 54778 RNF111 ring finger protein 111 XM_011521699.2 97% 97% (many diffs)
16 human 54778 RNF111 ring finger protein 111 XM_006720575.3 95.9% 95.9% (many diffs)
17 human 54778 RNF111 ring finger protein 111 XM_011521697.3 95.5% 95.5% (many diffs)
18 human 54778 RNF111 ring finger protein 111 XM_011521696.2 95.4% 95.4% (many diffs)
19 human 54778 RNF111 ring finger protein 111 XM_011521694.2 94.7% 94.7% (many diffs)
20 mouse 93836 Rnf111 ring finger 111 XM_006511587.3 88.3% 90.3% (many diffs)
21 mouse 93836 Rnf111 ring finger 111 XM_006511586.2 88.2% 90.2% (many diffs)
22 mouse 93836 Rnf111 ring finger 111 NM_033604.2 87.5% 89.5% (many diffs)
23 mouse 93836 Rnf111 ring finger 111 XM_006511582.2 86.7% 88.7% (many diffs)
24 mouse 93836 Rnf111 ring finger 111 XM_006511583.3 86.7% 88.7% (many diffs)
25 mouse 93836 Rnf111 ring finger 111 XM_006511584.2 86.7% 88.7% (many diffs)
26 mouse 93836 Rnf111 ring finger 111 XM_006511581.3 80.2% 82.1% (many diffs)
27 mouse 93836 Rnf111 ring finger 111 XM_006511580.3 80.1% 82% (many diffs)
28 mouse 93836 Rnf111 ring finger 111 XM_017313709.1 79.6% 81.5% (many diffs)
29 mouse 93836 Rnf111 ring finger 111 XM_006511578.3 79.6% 81.4% (many diffs)
30 mouse 93836 Rnf111 ring finger 111 XM_006511577.3 79.5% 81.3% (many diffs)
31 mouse 93836 Rnf111 ring finger 111 XM_011242841.2 79% 80.8% (many diffs)
32 mouse 93836 Rnf111 ring finger 111 XM_006511576.2 78.9% 80.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3021
ORF length:
2955
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc tcaatggact cctgaatata aggagctcta caccttaaaa gtggatatga
121agagtgagat tccttctgat gcaccaaaga cacaggagag tctgaaaggg atccttttgc
181atccagagcc cattggggca gccaaaagtt ttcctgcagg agttgagatg attaatagta
241aagtggggaa tgaattctct cacctgtgtg atgattctca aaagcaagag aaggaaatga
301atggtaacca gcaagaacaa gaaaaaagtc tcgttgtgag gaaaaaacgc aaaagccagc
361aggctggccc ttcgtatgtg cagaattgtg ttaaagaaaa ccagggaata ttaggactga
421ggcaacacct agggacacca agtgatgaag ataatgattc ctcttttagt gattgtcttt
481cttctccttc atctagtctg cattttgggg attctgatac tgtgacttca gatgaggata
541aagaagtctc tgtaagacat tcccagacca ttttgaatgc taaaagtaga agccatagtg
601cacggtctca taagtggcct cggactgaga cagaatctgt atcgggattg ttaatgaaaa
661gaccctgttt acatggcagt tcgttacgga gacttccatg cagaaagaga tttgtaaaaa
721ataattcctc acagaggaca cagaaacaaa aagagaggat attaatgcag aggaagaaac
781gagaagtgtt agctcgaaga aaatatgcct tgctacctag ttctagtagt tccagtgaga
841atgacctcag cagtgaatcc tcttctagct catcaactga aggagaagaa gatttgtttg
901tttctgccag tgaaaaccac caaaacaatc cagctgttcc ctcaggaagt attgatgaag
961atgttgtggt gatagaagct tcctccactc cccaggttac tgccaatgaa gaaattaatg
1021ttacctcaac tgacagtgaa gtggagattg taacagttgg agaaagctat cggtctcgtt
1081caacccttgg acactccaga tctcattgga gccagggttc cagttctcat gcaagtcggc
1141cacaggagcc acggaaccgc agtaggattt ctactgttat acagcccttg aggcagaatg
1201cagcagaagt tgtggacctt accgttgatg aagatgaacc tactgtagta ccaaccactt
1261ctgcaagaat ggaatcacaa gctactagcg cttccattaa caattcaaat ccatctacct
1321ctgagcaggc ctctgatact gcttcagctg tcaccagtag ccaaccttcc acagtgtcag
1381agacttcagc tactcttaca agcaatagta ccactggcac ttctatagga gatgactcaa
1441ggagaactac atctagtgct gtaacggaaa ctggccctcc tgcaatgcca aggttacctt
1501cctgctgtcc ccagcactca ccatgtggag ggtcgtcaca gaaccaccat gcattaggac
1561atcctcatac aagttgcttt cagcagcatg gtcaccattt tcaacatcat caccaccacc
1621accatactcc ccacccagct gtcccagttt ctccttcctt tagtgatcct gcttgccctg
1681tggaaagacc tccacaagta caagcacctt gtggagcaaa tagtagttct ggtaccagct
1741atcatgaaca ggcattgcca gtggacctga gcaacagtgg tatcagaagt catggaagtg
1801gcagttttca tggagcatct gcatttgacc cctgctgccc tgtttcttcc tcccgagctg
1861caatctttgg ccatcaggcc gctgctgctg ccccaagtca acctttatca tcaatagatg
1921gctatggatc aagcatggtt gcgcagcccc agccccagcc ccctccacag ccctctctct
1981catcatgtcg acattacatg ccaccccctt atgcctcttt gacaaggcca cttcatcatc
2041aagcttctgc ctgcccgcat tctcatggaa acccccctcc tcagactcag cctccgcctc
2101aagtggatta tgttattcct catcctgtac atgctttcca ttctcaaata tcttctcatg
2161caacatctca tcctgtggca cccccaccac caactcactt agccagtaca gctgcaccaa
2221tccctcagca tcttcctcct acacaccagc caatttcgca ccatattcca gccacagcac
2281ctccagcaca gagactgcat cctcatgaag tgatgcagag gatggaagtt caaaggagga
2341ggatgatgca gcatccaacg cgggcacatg aacgcccccc accccatcca cataggatgc
2401acccaaacta tggtcatggg catcatattc atgtgcctca gactatgtcc tcacatcctc
2461gacaggctcc agagaggtct gcctgggaac tgggaattga agctggagtg actgcagcta
2521cttatacacc tggtgcattg catcctcact tggcccatta tcacgcacct cctcgacttc
2581atcacttaca attaggagct cttcctttaa tggttcctga tatggcaggc tatcctcaca
2641tccgttacat ttcatcagga ttGGATGGAA CATCATTCAG AGGTCCTTTC AGGGGCAATT
2701TTGAGGAACT GATTCATTTG GAAGAAAGAT TAGGCAATGT CAATCGTGGA GCATCCCAGG
2761GGACAATTGA AAGATGTACA TATCCACATA AATACAAAAA GAGGAAACTG CACTGCAAAC
2821AAGATGGGGA AGAAGGGACT GAGGAAGACA CAGAGGAAAA ATGTACTATC TGTTTGTCTA
2881TTTTAGAGGA AGGTGAAGAT GTGAGACGTC TTCCATGTAT GCACCTTTTC CACCAAGTGT
2941GTGTTGACCA ATGGTTGATT ACCAATAAGA AGTGCCCCAT ATGCAGAGTG GACATTGAGG
3001CCCAGCTGCC AAGTGAAAGT TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
3061CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
3121AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACAAG ATGAATGATG
3181GTTTCAATAT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)