Construct: ORF TRCN0000480615

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002117.1_s317c1
Derived from:
ccsbBroadEn_03846
DNA Barcode:
CAACTTTTTCAAAAGAATTGGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPP4R4 (57718)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480615
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57718 PPP4R4 protein phosphatase 4 regul... NM_058237.2 100% 100%
2 human 57718 PPP4R4 protein phosphatase 4 regul... NM_001348142.1 90.7% 90.7% 0_1ins243
3 human 57718 PPP4R4 protein phosphatase 4 regul... XM_024449672.1 90.7% 90.7% 0_1ins243
4 human 57718 PPP4R4 protein phosphatase 4 regul... XM_017021528.2 89.4% 89% (many diffs)
5 human 57718 PPP4R4 protein phosphatase 4 regul... NM_001348143.2 87.7% 87.7% 0_1ins321
6 human 57718 PPP4R4 protein phosphatase 4 regul... NM_001348144.2 87.7% 87.7% 0_1ins321
7 human 57718 PPP4R4 protein phosphatase 4 regul... XM_011537039.2 87.7% 87.7% 0_1ins321
8 human 57718 PPP4R4 protein phosphatase 4 regul... XM_011537040.2 87.7% 87.7% 0_1ins321
9 human 57718 PPP4R4 protein phosphatase 4 regul... XM_024449673.1 87.7% 87.7% 0_1ins321
10 human 57718 PPP4R4 protein phosphatase 4 regul... NR_145441.2 67.4% 1_144del;2155_2180del;2790_3883del
11 human 57718 PPP4R4 protein phosphatase 4 regul... NM_001348145.1 15.9% 11.4% (many diffs)
12 human 57718 PPP4R4 protein phosphatase 4 regul... NM_020958.2 13.2% 12% (many diffs)
13 mouse 74521 Ppp4r4 protein phosphatase 4, regu... NM_028980.3 88.4% 90.8% (many diffs)
14 mouse 74521 Ppp4r4 protein phosphatase 4, regu... XM_006516308.1 87.9% 90.3% (many diffs)
15 mouse 74521 Ppp4r4 protein phosphatase 4, regu... XM_011244194.2 80.1% 79.3% (many diffs)
16 mouse 74521 Ppp4r4 protein phosphatase 4, regu... XM_006516312.2 77.3% 79.4% (many diffs)
17 mouse 74521 Ppp4r4 protein phosphatase 4, regu... XR_381552.2 68.6% (many diffs)
18 mouse 74521 Ppp4r4 protein phosphatase 4, regu... XM_006516314.3 65.5% 66.3% (many diffs)
19 mouse 74521 Ppp4r4 protein phosphatase 4, regu... XM_006516315.3 64.4% 66.1% (many diffs)
20 mouse 74521 Ppp4r4 protein phosphatase 4, regu... XR_001780496.1 40% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2685
ORF length:
2619
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca tccgccgccg cccgccgccg cgatggattt cagtcagaac agcctgttcg
121gttacatgga ggacctgcag gagctcacca tcatcgagag gccggtccgc cggagcctca
181agacaccgga agaaatagaa agattgacag tcgatgaaga cctcagtgat attgaaaggg
241ctgtttatct gctcagtgct ggtcaagatg tccaaggaac aagtgtgatt gcaaatctcc
301catttttgat gcgacagaat cccactgaga cgcttcggag agtgttgcca aaagtcagag
361aagccctgca tgttgcagga gtggaaatgc agttaacggc tgcgatgtca tttctgacca
421ttctgcagga cgaatcagtg tcaattcatg catataccca ctcattcctc caagtcattc
481tcctgcatct ggagcacagg gacacaggtg tcagcaatgc atggctggaa actcttctgt
541ctgttataga agtattgcca aaagaaaccc tacggcatga gattttgaat ccacttgttt
601ccaaggcaca actttcccaa acagtccagt ctcgtttagt tagttgtaaa attttaggaa
661aattgaccaa caaatttgat gcccacacca ttaagcgaga aatacttcct ctggtaaaat
721cactctgtca agatgtagaa tatgaagttc gatcttgtat gtgtcggcaa ttagaaaata
781tagcccaggg cattgggaca gaacttacaa aaagtgtggt gctccctgaa ttaatagaac
841tttctaggga tgaaggcagc agtgtacgac ttgcagcttt tgaaactttg gttaatctgc
901ttgatatatt tgatacagat gacagaagtc aaactatact tcccttagtg aaatcatttt
961gtgaaaaatc tttcaaagca gatgaatcaa ttcttatttc tttatctttc catttaggaa
1021aactatgtca tggactatat ggaattttca ctccagatca gcacttgaga tttttggaat
1081tttataagaa actttgtaca ttgggtttgc aacaagaaaa tggacacaat gaaaaccaga
1141ttccacccca aatcctagag caggagaaga aatatatttc agtacggaag aactgtgctt
1201ataactttcc ggccatgatt gtttttgttg atcctaaaaa cttccacatg gaactctatt
1261ctacattctt ctgcctttgc catgaccctg aagtaccagt cagatacact attgctattt
1321gcttttatga agtatctaag cttctgaatt ctggagtata tttaatacat aaagaactaa
1381taacattatt acaagatgaa tcactggagg tactagatgc tcttatagat catcttccag
1441aaatcttgga acttatgtct actggtggag aaagcagtgt tcaagaaaat aagttatctt
1501ctctgcctga cttgattcca gcactcacag ctgctgaaca gcgagctgca gcctctttaa
1561aatggagaac tcatgagaag ctacttcaga aatatgcctg cctgccacat gtcatatcaa
1621gcgatcagat ttattaccgt ttcttacaaa gaatgttcac aatcatgatg acaaataatg
1681ttttacctgt ccaaaaggcg gcttcacgaa ctctatgcat ttttctgcgt tataatcgta
1741aacaagaaca gagacatgag gtcattcaaa aattaattga acaattgggc caaggaaaaa
1801gttactggaa tagacttcga tttttggata cctgtgaatt tattatagag atattttcaa
1861aatcattttt ctgtaaatat ttctttctac ctgctattga actgacacat gatccagtag
1921caaatgtgag aatgaaactt tgctacctgt tgcccaaagt gaaatctact ctgaagattc
1981ctgctgataa gcatctactt cagcagttag aaatgtgtgt gaggaaactc ctgtgtcaag
2041aaaaagataa agatgttctg gctattgtaa aaagaactgt attagagttg gacagaatgg
2101aaatgtctat ggatgctttt cagaaaaagt tttatgagaa agatttgttg gatcaagaga
2161aagaaagaga agaactactt cttttggaaa tggaacaatt agagaaagaa aagcaacaga
2221atgatggaag gccCATGAGT GATAAAATGT TTGAAAAGAA ACGTAGAGAC ACTAAGACAC
2281CAACGCAAAG TCTGCCCAAG AACATCCCCA TTTCTGTTCC TGGACCCTCT TCTGTCACCC
2341CATCGACAAG TAAAGAAATC AAGAAATCCA AACTGATTCG AAGCCAGTCT TTTAATAATC
2401AAGCTTTTCA TGCAAAATAT GGCAACTTAG AGAAATGTGC TAGTAAAAGT TCTACAACAG
2461GATATACAAC TTCTGTCTCA GGGTTAGGAA AGACTTCTGT GCTTTCACTA GCTGATGATT
2521CATTCCGGAC TCGTAATGCC AGTAGCGTTC CATCTTCCTT TTCTCCTAAT ACTCCCTTAC
2581CGAGTACTTC CCGTGGGACA GGTAACTCAG TTGACCCCAA GAGCAGTGGA AGTAAAGATA
2641CACAACCACG GAAGGCTACC TTAAAATCCA GAAAATCCAA TCCTTACCCA ACTTTCTTGT
2701ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
2761AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
2821GAAAGGACGA CAACTTTTTC AAAAGAATTG GTGCACGCGT TAAGTCgaca atcaacctct
2881ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)