Construct: ORF TRCN0000480622
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018342.1_s317c1
- Derived from:
- ccsbBroadEn_07652
- DNA Barcode:
- TGTAAGAACCATGTTGCCGACTGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STAMBP (10617)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480622
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10617 | STAMBP | STAM binding protein | NM_001353967.1 | 99.9% | 100% | 12T>C |
| 2 | human | 10617 | STAMBP | STAM binding protein | NM_001353968.1 | 99.9% | 100% | 12T>C |
| 3 | human | 10617 | STAMBP | STAM binding protein | NM_006463.5 | 99.9% | 100% | 12T>C |
| 4 | human | 10617 | STAMBP | STAM binding protein | NM_201647.3 | 99.9% | 100% | 12T>C |
| 5 | human | 10617 | STAMBP | STAM binding protein | NM_213622.4 | 99.9% | 100% | 12T>C |
| 6 | human | 10617 | STAMBP | STAM binding protein | XM_011532483.3 | 99.9% | 100% | 12T>C |
| 7 | human | 10617 | STAMBP | STAM binding protein | NM_001353969.1 | 95.6% | 95.7% | (many diffs) |
| 8 | human | 10617 | STAMBP | STAM binding protein | NM_001353970.1 | 95.6% | 95.7% | (many diffs) |
| 9 | human | 10617 | STAMBP | STAM binding protein | XM_024452533.1 | 95.6% | 95.7% | (many diffs) |
| 10 | human | 10617 | STAMBP | STAM binding protein | XM_011532485.3 | 79% | 79% | 12T>C;1006G>A;1008_1008delAins265 |
| 11 | human | 10617 | STAMBP | STAM binding protein | NM_001353971.1 | 68.1% | 68.1% | 0_1ins405 |
| 12 | human | 10617 | STAMBP | STAM binding protein | NM_001353972.1 | 68.1% | 68.1% | 0_1ins405 |
| 13 | human | 10617 | STAMBP | STAM binding protein | NM_001353973.1 | 68.1% | 68.1% | 0_1ins405 |
| 14 | human | 10617 | STAMBP | STAM binding protein | NM_001353974.1 | 68.1% | 68.1% | 0_1ins405 |
| 15 | human | 10617 | STAMBP | STAM binding protein | NM_001353975.1 | 68.1% | 68.1% | 0_1ins405 |
| 16 | human | 10617 | STAMBP | STAM binding protein | NR_148669.2 | 67.4% | 1_48del;60T>C;1321_1883del | |
| 17 | human | 10617 | STAMBP | STAM binding protein | NM_001353976.1 | 64% | 63.9% | (many diffs) |
| 18 | human | 10617 | STAMBP | STAM binding protein | XM_024452534.1 | 64% | 63.9% | (many diffs) |
| 19 | human | 10617 | STAMBP | STAM binding protein | NR_148670.2 | 61.6% | 1_228del;240T>C;1501_2063del | |
| 20 | human | 10617 | STAMBP | STAM binding protein | NR_148668.2 | 54.1% | 1_48del;60T>C;1321_2346del | |
| 21 | human | 10617 | STAMBP | STAM binding protein | NR_148671.2 | 53% | 1_562del;574T>C;1835_2397del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1338
- ORF length:
- 1272
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc tgaccacgga gatgtgagcc tcccgcccga agaccgggtg agggctctct 121 cccagctggg tagtgcggta gaggtgaatg aagacattcc accccgtcgg tacttccgct 181 ctggagttga gattatccga atggcatcca tttactctga ggaaggcaac attgaacatg 241 ccttcatcct ctataacaag tatatcacgc tctttattga gaaactacca aaacatcgag 301 attacaaatc tgctgtcatt cctgaaaaga aagacacagt aaagaaatta aaggagattg 361 catttcccaa agcagaagag ctgaaggcag agctgttaaa acgatatacc aaagaatata 421 cagaatataa tgaagaaaag aagaaggaag cagaggaatt ggcccggaac atggccatcc 481 agcaagagct ggaaaaggaa aaacagaggg tagcacaaca gaagcagcag caattggaac 541 aggaacagtt ccatgccttc gaggagatga tccggaacca ggagctagaa aaagagcgac 601 tgaaaattgt acaggagttt gggaaggtag accctggcct aggtggcccg ctagtgcctg 661 acttggagaa gccctcctta gatgtgttcc ccaccttaac agtctcatcc atacagcctt 721 cagactgtca cacaactgta aggccagcta agccacctgt ggtggacagg tccttgaaac 781 ctggagcact gagcaactca gaaagtattc ccacaatcga tggattgcgc catgtggtgg 841 tgcctgggcg gctgtgccca cagtttctcc agttagccag tgccaacact gcccggggag 901 tggagacatg tggaattctc tgtggaaaac tgatgaggaa tgaatttacc attacccatg 961 ttcTCATCCC CAAGCAAAGT GCTGGGTCTG ATTACTGCAA CACAGAGAAC GAAGAAGAAC 1021 TTTTCCTCAT ACAGGATCAG CAGGGCCTCA TCACACTGGG CTGGATTCAT ACTCACCCCA 1081 CACAGACCGC GTTTCTCTCC AGTGTCGACC TACACACTCA CTGCTCTTAC CAGATGATGT 1141 TGCCAGAGTC AGTAGCCATT GTTTGCTCCC CCAAGTTCCA GGAAACTGGA TTCTTTAAAC 1201 TAACTGACCA TGGACTAGAG GAGATTTCTT CCTGTCGCCA GAAAGGATTT CATCCACACA 1261 GCAAGGATCC ACCTCTGTTC TGTAGCTGCA GCCACGTGAC TGTTGTGGAC AGAGCAGTGA 1321 CCATCACAGA CCTTCGATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1381 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1441 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATGTAAGA ACCATGTTGC 1501 CGACTGGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt