Construct: ORF TRCN0000480729

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007667.1_s317c1
Derived from:
ccsbBroadEn_11858
DNA Barcode:
ACTTAAGTTCTTTCTTATGTAATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AHDC1 (27245)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480729
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27245 AHDC1 AT-hook DNA binding motif c... NM_001029882.3 24.8% 24.8% 1_3612del;4806C>T
2 human 27245 AHDC1 AT-hook DNA binding motif c... NM_001371928.1 24.8% 24.8% 1_3612del;4806C>T
3 human 27245 AHDC1 AT-hook DNA binding motif c... XM_005245848.3 24.8% 24.8% 1_3612del;4806C>T
4 human 27245 AHDC1 AT-hook DNA binding motif c... XM_005245849.3 24.8% 24.8% 1_3612del;4806C>T
5 human 27245 AHDC1 AT-hook DNA binding motif c... XM_005245850.3 24.8% 24.8% 1_3612del;4806C>T
6 human 27245 AHDC1 AT-hook DNA binding motif c... XM_005245851.3 24.8% 24.8% 1_3612del;4806C>T
7 human 27245 AHDC1 AT-hook DNA binding motif c... XM_005245852.3 24.8% 24.8% 1_3612del;4806C>T
8 human 27245 AHDC1 AT-hook DNA binding motif c... XM_011541255.1 24.8% 24.8% 1_3612del;4806C>T
9 human 27245 AHDC1 AT-hook DNA binding motif c... XM_011541256.2 24.8% 24.8% 1_3612del;4806C>T
10 human 27245 AHDC1 AT-hook DNA binding motif c... XM_011541257.2 24.8% 24.8% 1_3612del;4806C>T
11 human 27245 AHDC1 AT-hook DNA binding motif c... XM_024446461.1 24.8% 24.8% 1_3612del;4806C>T
12 human 27245 AHDC1 AT-hook DNA binding motif c... XR_946609.2 17.9% 1_4679del;5873C>T;5877_6656del
13 mouse 230793 Ahdc1 AT hook, DNA binding motif,... NM_146155.3 22.4% 24% (many diffs)
14 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538734.1 22.4% 24% (many diffs)
15 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538736.2 22.4% 24% (many diffs)
16 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538737.1 22.4% 24% (many diffs)
17 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538738.3 22.4% 24% (many diffs)
18 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538739.1 22.4% 24% (many diffs)
19 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538740.1 22.4% 24% (many diffs)
20 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538741.3 22.4% 24% (many diffs)
21 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_006538742.1 22.4% 24% (many diffs)
22 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_011250231.1 22.4% 24% (many diffs)
23 mouse 230793 Ahdc1 AT hook, DNA binding motif,... XM_017320159.1 22.4% 24% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1263
ORF length:
1197
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat ggactggaac gaggcatcat ctgcccccgg ctacaactgg aaccagagtg
121tcctctttca gagtagctcc aagccgggcc gtggacggcg gaagaaggtg gacctgttcg
181aggcctcaca tctgggcttc ccgacatccg cctctgccgc tgcctcaggc tacccatcca
241aacggagcac tgggccccgg cagccgcgag gtggacgggg cggtggggcc tgctcagcca
301agaaggagcg gggtggcgca gcggccaaag ccaagttcat ccccaagcca cagccagtca
361acccactgtt ccaggacagt cctgacctcg gcctggacta ctatagcggg gacagcagca
421tgtcaccact gccctcacag tcgagggcct tcggcgtggg agagcgagac ccctgtgact
481tcataggacc ctactccatg aacccgtcca cgccttccga tggcaccttt ggccaaggct
541tccactgcga ctcgcccagc ctgggtgctc ccgagcttga tggcaagcat ttcccaccgc
601tggcccaccc acccacggtg tttgacgccg gcctgcagaa ggcatactcg cccacctgct
661cgcctacact gggcttcaag gaagagctgc ggccaccgcc cacaaagctg gctgcctgcg
721agcccctcaa gcatggactc cagggggcca gcctgggcca cgcagctgca gcccaggccc
781acctgagctg ccgggacctg ccgctgggcc agccccacta cgattccccc agctgcaagg
841gcacagccta ttggtaccct ccaggctcag ctgcccgcag cccgccctat gaaggcaagg
901tgggtacagg gctgctggct gacttcctgg gcaggacgga ggccgcgtgc cTCAGTGCCC
961CTCACCTGGC TAGCCCACCA GCCACGCCCA AGGCCGACAA GGAGCCACTG GAAATGGCCC
1021GGCCCCCTGG CCCACCCCGT GGCCCTGCTG CAGCCGCTGC TGGCTATGGC TGCCCACTCC
1081TTAGTGACTT GACCCTGTCC CCCGTGCCGA GGGACTCGCT GCTGCCCCTG CAGGACACCG
1141CCTACAGGTA CCCAGGCTTT ATGCCCCAGG CGCATCCTGG CCTGGGTGGG GGCCCCAAGA
1201GCGGCTTCCT GGGGCCCATG GCGGAACCTC ACCCCGAGGA CACATTCACC GTCACATCTC
1261TGTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1321TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1381GGCTTTATAT ATCTTGTGGA AAGGACGAAC TTAAGTTCTT TCTTATGTAA TCACGCGTTA
1441AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)

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