Construct: ORF TRCN0000480795

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015702.1_s317c1
Derived from:
ccsbBroadEn_00851
DNA Barcode:
TGACATTATTTCGGTTGGAAAAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IL6R (3570)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480795
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3570 IL6R interleukin 6 receptor NM_181359.3 100% 100%
2 human 3570 IL6R interleukin 6 receptor XM_006711299.4 95.8% 95.8% 948_995del
3 human 3570 IL6R interleukin 6 receptor NM_001206866.1 91.4% 87.9% (many diffs)
4 human 3570 IL6R interleukin 6 receptor XM_005245140.3 81.7% 71% (many diffs)
5 human 3570 IL6R interleukin 6 receptor NM_000565.4 77.9% 76.1% 1065_1158del;1190_1404del
6 human 3570 IL6R interleukin 6 receptor XM_005245139.2 77.9% 74.8% 806_807ins142;954_1080del
7 human 3570 IL6R interleukin 6 receptor XM_017001201.2 75.4% 69.2% (many diffs)
8 human 3570 IL6R interleukin 6 receptor XM_006711298.2 75.4% 73.6% 948_995del;1113_1206del;1238_1452del
9 human 3570 IL6R interleukin 6 receptor XM_017001200.2 72.8% 71.4% 1065_1257del;1289_1503del
10 human 3570 IL6R interleukin 6 receptor XM_017001199.2 70.5% 69.2% 948_995del;1113_1305del;1337_1551del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1164
ORF length:
1095
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctggccgtc ggctgcgcgc tgctggctgc cctgctggcc gcgccgggag
121cggcgctggc cccaaggcgc tgccctgcgc aggaggtggc gagaggcgtg ctgaccagtc
181tgccaggaga cagcgtgact ctgacctgcc cgggggtaga gccggaagac aatgccactg
241ttcactgggt gctcaggaag ccggctgcag gctcccaccc cagcagatgg gctggcatgg
301gaaggaggct gctgctgagg tcggtgcagc tccacgactc tggaaactat tcatgctacc
361gggccggccg cccagctggg actgtgcact tgctggtgga tgttcccccc gaggagcccc
421agctctcctg cttccggaag agccccctca gcaatgttgt ttgtgagtgg ggtcctcgga
481gcaccccatc cctgacgaca aaggctgtgc tcttggtgag gaagtttcag aacagtccgg
541ccgaagactt ccaggagccg tgccagtatt cccaggagtc ccagaagttc tcctgccagt
601tagcagtccc ggagggagac agctctttct acatagtgtc catgtgcgtc gccagtagtg
661tcgggagcaa gttcagcaaa actcaaacct ttcagggttg tggaatcttg cagcctgatc
721cgcctgccaa catcacagtc actgccgtgg CCAGAAACCC CCGCTGGCTC AGTGTCACCT
781GGCAAGACCC CCACTCCTGG AACTCATCTT TCTACAGACT ACGGTTTGAG CTCAGATATC
841GGGCTGAACG GTCAAAGACA TTCACAACAT GGATGGTCAA GGACCTCCAG CATCACTGTG
901TCATCCACGA CGCCTGGAGC GGCCTGAGGC ACGTGGTGCA GCTTCGTGCC CAGGAGGAGT
961TCGGGCAAGG CGAGTGGAGC GAGTGGAGCC CGGAGGCCAT GGGCACGCCT TGGACAGAAT
1021CCAGGAGTCC TCCAGCTGAG AACGAGGTGT CCACCCCCAT GCAGGCACTT ACTACTAATA
1081AAGACGATGA TAATATTCTC TTCAGAGATT CTGCAAATGC GACAAGCCTC CCAGGTTCAA
1141GAAGACGTGG AAGCTGCGGG CTCTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1201AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1261TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT GACATTATTT
1321CGGTTGGAAA AGAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1381att

Download FASTA (ORF) (Full)