Construct: ORF TRCN0000480836
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016353.1_s317c1
- Derived from:
- ccsbBroadEn_05263
- DNA Barcode:
- CCGACGAAAAACTATTAGGTTCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RBM24 (221662)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480836
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221662 | RBM24 | RNA binding motif protein 24 | NM_153020.2 | 100% | 100% | |
| 2 | human | 221662 | RBM24 | RNA binding motif protein 24 | NM_001143941.1 | 93.1% | 93.1% | 0_1ins39 |
| 3 | human | 221662 | RBM24 | RNA binding motif protein 24 | XM_011514387.2 | 86.3% | 33% | 0_1ins39;172_173ins28;507_519del |
| 4 | human | 221662 | RBM24 | RNA binding motif protein 24 | NM_001143942.2 | 79.5% | 74.4% | (many diffs) |
| 5 | human | 221662 | RBM24 | RNA binding motif protein 24 | XM_011514388.2 | 73.2% | 1.2% | (many diffs) |
| 6 | human | 221662 | RBM24 | RNA binding motif protein 24 | XM_011514389.2 | 66.2% | 1.2% | (many diffs) |
| 7 | human | 221662 | RBM24 | RNA binding motif protein 24 | XM_005248932.3 | 30.2% | 25.9% | (many diffs) |
| 8 | mouse | 666794 | Rbm24 | RNA binding motif protein 24 | NM_001081425.1 | 69.7% | 73.6% | (many diffs) |
| 9 | mouse | 666794 | Rbm24 | RNA binding motif protein 24 | XR_382235.2 | 14.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 642
- ORF length:
- 573
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtatgtatgt ctgtgtgtgt ctgttgctaa ggtcaccatg gctgaccggg 121 ctgctgccga aagggcctgc aaggatccca atcccatcat tgatggcaga aaggccaacg 181 tgaacctggc atacttagga gcaaaaccaa ggatcatgca accaggtttt gcctttggtg 241 ttcaacaact tcatccagcc cTTATACAAA GACCTTTCGG GATACCTGCC CACTATGTCT 301 ATCCGCAGGC TTTTGTGCAG CCGGGAGTGG TCATTCCACA CGTCCAGCCG ACAGCAGCTG 361 CCGCCTCCAC CACCCCTTAC ATTGATTACA CTGGAGCTGC ATACGCACAA TACTCAGCAG 421 CTGCTGCTGC TGCCGCCGCC GCTGCTGCCT ATGACCAGTA CCCCTATGCA GCCTCTCCAG 481 CTGCTGCAGG ATATGTTACT GCTGGGGGCT ATGGCTACGC AGTCCAGCAG CCAATCACCG 541 CAGCGGCACC TGGGACAGCT GCCGCCGCCG CTGCAGCAGC TGCTGCCGCT GCAGCATTTG 601 GCCAGTACCA GCCTCAGCAG CTGCAGACAG ACCGAATGCA ATTGCCAACT TTCTTGTACA 661 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 721 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 781 AGGACGACCG ACGAAAAACT ATTAGGTTCG TACGCGTTAA GTCgacaatc aacctctgga 841 ttacaaaatt tgtgaaagat t