Construct: ORF TRCN0000480914
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002124.1_s317c1
- Derived from:
- ccsbBroadEn_09624
- DNA Barcode:
- TTACTAAAATTAAGAAAAATACCC
- Epitope Tag:
- V5 (not translated due to frame shift)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDAN1 (146059)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480914
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 146059 | CDAN1 | codanin 1 | NM_138477.4 | 99.9% | 99.8% | 1262C>T;2317T>N |
| 2 | human | 146059 | CDAN1 | codanin 1 | XM_005254176.5 | 99.8% | 99.7% | 569_571delGCA;1265C>T;2320T>N |
| 3 | human | 146059 | CDAN1 | codanin 1 | XM_011521271.2 | 99.2% | 99.1% | 89_112del;1286C>T;2341T>N |
| 4 | human | 146059 | CDAN1 | codanin 1 | XM_011521270.2 | 99.2% | 99.1% | (many diffs) |
| 5 | human | 146059 | CDAN1 | codanin 1 | XR_001751105.1 | 77.6% | (many diffs) | |
| 6 | human | 146059 | CDAN1 | codanin 1 | XR_001751104.1 | 77.3% | (many diffs) | |
| 7 | human | 146059 | CDAN1 | codanin 1 | XM_011521274.2 | 72.5% | 72.4% | 0_1ins1008;254C>T;1309T>N |
| 8 | human | 146059 | CDAN1 | codanin 1 | XR_931757.2 | 59.4% | (many diffs) | |
| 9 | mouse | 68968 | Cdan1 | congenital dyserythropoieti... | NM_026891.2 | 85.6% | 87.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3747
- ORF length:
- 3681
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc ggccgttttg gagtcgctgc tgcgagaaga ggtgtcggtc gcagccgtcg 121 tgcggtggat cgcgcgcagc acccagggtt cggaggataa cgctggggag gcggccgcgc 181 tgagctcact ccgggccctg cggaaagaat tcgtaccgtt cctgttgaac ttcctgaggg 241 agcagagcag ccgcgtcctc ccgcaggggc ccccgacccc cgccaagacc ccgggcgcct 301 cggcagcctt gccagggagg ccgggaggcc cgccgcgggg tagccgcggg gcgcgcagcc 361 agcttttccc tccgaccgag gcccagagca ccgctgccga ggcccctctg gcccgccgcg 421 ggggcaggag gcggggcccg gggccggccc gcgagcgtgg aggccgcggc ctggaggagg 481 gggtcagcgg ggagagcctg cccggagccg ggggccggag gcttaggggc tctggcagcc 541 ccagccgccc cagcctcacg ctgtctgatc cgccaaacct cagcaacctg gaggagttcc 601 ctcccgtagg ctcggttccc cccggcccta cagggacgaa gccttctcgc aggatcaacc 661 caactccggt gagcgaagag cggtcactct ccaagcccaa gacctgcttc acctcacccc 721 caatcagctg tgtccccagt tcccaaccct cagccctgga cactagccct tggggccttg 781 gccttccccc agggtgcaga agtctgcaag aggagcgaga gatgctcagg aaggagcgct 841 ctaagcagct gcagcagtca cctaccccca cctgtcccac cccagaattg gggtcgcccc 901 tccccagccg gacaggaagc ctcacagatg aacctgcaga ccctgccaga gtgtcttccc 961 gccagcgcct ggagcttgta gcccttgttt actcctcgtg cattgctgag aacctggtac 1021 caaacctctt cttggagctt ttcttcgtct ttcagctcct cactgcccgg aggatggtga 1081 ctgccaagga cagcgaccct gaactaagtc cagctgtcct agattccctg gaaagtccac 1141 tgttccaaag catccacgat tgtgtcttct ttgcagtgca ggttttggag tgtcactttc 1201 aggttctttc caacctggac aaagggacct tgaagctgct ggctgagaat gagcggctgc 1261 tgtgcttctc accagctctg caaggccgcc ttcgagctgc ctatgagggc agtgttgcca 1321 aggtctttct ggtgatgcct ccctctactc aagctgtctc ctttcagcca gagactgaca 1381 atcgtgccaa cttctccagt gaccgagcct ttcatacttt taagaaacag agggatgtgt 1441 tttatgaggt gctgcgagag tgggaagatc accatgagga gcctggctgg gattttgaga 1501 agggcttggg cagcagaatc agggccatga tgggtcagct ctccgcagcc tgcagccaca 1561 gccactttgt tcggcttttc caaaaacaac tactccagat gtgtcagagc cctggtggtg 1621 ctgggggcac cgtcttgggc gaggccccag atgtgttgag tatgctggga gctgacaagc 1681 tggggcggtt gtggcgccta caggaacggc ttatggctcc tcagagcagt ggggggccct 1741 gcccaccccc caccttccca ggctgtcaag gcttctttag ggacttcatc cttagtgcca 1801 gcagcttcca gtttaaccag catctcatgg acagtctgag cttgaagatc caggagctca 1861 atggtcttgc cctgccccag catgagccca atgatgaaga cggggagtca gacgtagact 1921 ggcagggtga gcggaagcaa tttgctgtgg tgcttcttag cctgagactt ttggctaaat 1981 tcctgggctt tgtggctttc ctgccatacc gggggcctga acctcccccg accggtgagc 2041 ttcaggactc cattctggcc ctcaggagcc aggtccctcc ggtcctggat gtgcggactc 2101 tgctgcagcg agggctgcag gcccgccggg cggtgctcac cgtgccctgg ctggtggagt 2161 ttctctcctt tgctgaccat gttgttccct tgctggaata ttaccgggac atcttcactc 2221 tcctgctgcg cctgcaccgg agcttggtgt tgtcgcagga gagtgagggg aagatgtgtt 2281 tcctgaacaa gctgctgcta cttgctgtcc tgggctggct tttccagatt cccacagtcc 2341 ctgaggactt gttctttctg gaagagggtc cctcatatgc cnttgaggtg gacacagtag 2401 ccccagagca tggcttggac aatgcgcctg tggtggacca gcagctgctc tacacctgct 2461 gcccctacat cggagagctc cggaaactgc tcgcttcgtg ggtgtcaggc agtagtggac 2521 ggagtggggg cttcatgagg aaaatcaccc ccaccactac caccagcctg ggagcccagc 2581 cttcccagac cagccagggg ctgcaggcac agctcgccca ggcctttttc cacaaccagc 2641 cgccctcctt gcgccggacc gtagagttcg tggcagaaag aattggatca aactgtgtca 2701 aacatatcaa ggctacactg gtggcagatc tggtgcgcca ggcagagtca cttctccaag 2761 agcagctggt gacacaggga gaggaagggg gagacccagc ccagctgttg gagatcttgt 2821 gttcccagct gtgccctcac ggggcccagg cattggccct ggggcgggag ttctgtcaaa 2881 ggaagagccc tggggctgtg cgggcgctgc ttccagagga gaccccggca gccgttctga 2941 gcagtgcaga gaacattgct gtggggcttg caacagagaa agcctgtgct tggctgtcag 3001 ccaacatcac agcactgatc aggagggagg tgaaagcagc agtgagtcgc acacttcgag 3061 cccagggtcc tgaacctgct gcccgggggg agcggagggg ctgctcccgc gcctgtgagc 3121 accatgctcc cctcccctcc cacctcatct ccgagataaa agacgtgctc tccttggccg 3181 tggggccacg ggaccctgac gagggagtct ccccagagca tctggaacag ctcctaggcc 3241 agctgggcca gacgctgcgg tgccgccagt tcctgtgccc acctgctgag cagcatctgg 3301 caaagtgctc tgtggagtta gcttccctcc tcgttgcaga tcaaattcct atccTAGGGC 3361 CCCCGGCACA GTACAGGCTG GAGAGAGGGC AGGCTCGAAG GCTTCTGCAC ATGCTGCTTT 3421 CCTTGTGGAA GGAAGACTTT CAGGGGCCGG TTCCGCTGCA GCTGCTGCTG AGCCCAAGAA 3481 ATGTGGGGCT TCTGGCAGAC ACAAGGCCAA GGGAGTGGGA CTTGCTGCTA TTCTTGCTAC 3541 GGGAGCTGGT GGAGAAGGGT CTGATGGGAC GGATGGAGAT AGAGGCCTGC CTGGGCAGCC 3601 TCCACCAGGC CCAGTGGCCA GGGGACTTTG CTGAAGAATT AGCAACACTG TCTAATCTGT 3661 TTCTAGCCGA GCCCCACCTG CCAGAACCCC AGCTAAGAGC CTGTGAGTTG GTGCAGCCAA 3721 ACCGGGGCAC TGTGCTGGCC CAGAGCTACC AACTTTCTTG TACAAAGTGG TTGATATCGG 3781 TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA 3841 ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG ATTACTAAAA 3901 TTAAGAAAAA TACCCACGCG TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa 3961 agatt