Construct: ORF TRCN0000480957
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000344.1_s317c1
- Derived from:
- ccsbBroadEn_07808
- DNA Barcode:
- CGTTGCAATGCGTTTACACTAGGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAB11FIP2 (22841)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480957
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22841 | RAB11FIP2 | RAB11 family interacting pr... | NM_014904.3 | 99.9% | 100% | 1497G>A |
| 2 | human | 22841 | RAB11FIP2 | RAB11 family interacting pr... | NM_001330167.1 | 96.1% | 96% | 1266_1325del;1557G>A |
| 3 | human | 22841 | RAB11FIP2 | RAB11 family interacting pr... | XM_017015926.1 | 83.3% | 81.8% | (many diffs) |
| 4 | mouse | 74998 | Rab11fip2 | RAB11 family interacting pr... | XM_011247386.2 | 88.5% | 92.5% | (many diffs) |
| 5 | mouse | 74998 | Rab11fip2 | RAB11 family interacting pr... | NM_001033172.3 | 85.5% | 89.4% | (many diffs) |
| 6 | mouse | 74998 | Rab11fip2 | RAB11 family interacting pr... | XM_011247388.2 | 67% | 67.2% | (many diffs) |
| 7 | mouse | 74998 | Rab11fip2 | RAB11 family interacting pr... | NM_001164367.1 | 63.4% | 65.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1605
- ORF length:
- 1536
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gatgctgtcc gagcaagccc aaaagtggtt tccaacccac gtgcaggtca 121 cagtgctcca agccaaagat ctgaagccaa aaggcaaaag tggtaccaat gacacataca 181 ctataattca gctgggcaag gaaaagtact ccacctctgt agctgagaaa acccttgagc 241 cagtttggaa ggaggaggcc tctttcgagc tacctggatt gctaattcag ggaagtccag 301 agaaatacat tcttttcctt atagttatgc acaggtccct ggtgggtctg gataaatttt 361 tagggcaggt ggcaatcaat ctcaatgaca tctttgagga caaacaaaga aggaaaacag 421 agtggtttag attagaatcc aaacaaggaa aacgaatcaa aaacaggggt gagataaagg 481 tcaatattca gtttatgagg aacaatatga ccgcaagtat gtttgactta tcaatgaagg 541 acaaaaccag atctcctttt gcaaagttaa aagataagat gaagggtaga aaaaatgatg 601 gaacattttc tgatacgtct tctgcaatca ttccaagtac tcacatgccc gatgccaata 661 gtgaattttc aagtggtgaa atacagatga aatccaaacc aaaaaagcct tttctcttgg 721 gtcctcagcg actctcgtca gcgcattcaa tgtctgattt atctgggtcc catatgtctt 781 ctgagaaact gaaggctggc accataggtc aaacacatct tctcggacac cagttagatt 841 cctttggaac agttccagaa agtggaagtc tcaaatctcc acacagaaga acattaagct 901 ttgatacttc taaaatgaac caacctgaca gcattgtgga tgaaggtgaa ttgtgtttcg 961 gaagacaaaa tgacccattt acaaatgtga ctgcttcatt accccaaaaa tttgcaacac 1021 tgccaaggaa gaaaaatcca tttgaagaaa gcagcgaaac atgggacagc agcatgaatt 1081 tattttcaaa accaattgaa ataagaaaag aaaataaaag agagaaaagg gagaaagtta 1141 gcctgtttga aagagtgact ggaaaaaaag atagcagaag atctgataaa cttaacaatg 1201 ggggatctga tagcccttgt gacttgaaat caccTAATGC ATTTAGTGAA AATCGCCAGG 1261 ACTATTTTGA TTATGAGTCA ACCAATCCAT TTACAGCAAA ATTCAGGGCT TCAAATATAA 1321 TGCCATCTTC AAGTTTTCAT ATGAGTCCAA CAAGCAATGA AGACCTCAGG AAAATCCCGG 1381 ACAGCAACCC CTTTGATGCC ACTGCAGGGT ATCGTAGTCT GACCTATGAA GAGGTTCTAC 1441 AGGAGCTGGT GAAACACAAA GAACTCCTTA GGAGGAAAGA CACCCACATC CGGGAACTCG 1501 AGGACTACAT CGACAACCTC CTTGTAAGGG TAATGGAAGA AACGCCCAGT ATTCTCAGAG 1561 TGCCATATGA ACCATCCAGG AAAGCTGGCA AATTCTCTAA CAGTTTGCCA ACTTTCTTGT 1621 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1681 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1741 GAAAGGACGA CGTTGCAATG CGTTTACACT AGGAACGCGT TAAGTCgaca atcaacctct 1801 ggattacaaa atttgtgaaa gatt