Construct: ORF TRCN0000480984

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002227.1_s317c1
Derived from:
ccsbBroadEn_06561
DNA Barcode:
CCACTAGCCGGCTGCACGCGCTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MARS1 (4141)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480984
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4141 MARS1 methionyl-tRNA synthetase 1 NM_004990.4 99.9% 99.8% 1253G>A
2 human 4141 MARS1 methionyl-tRNA synthetase 1 XR_001748704.2 96.6% (many diffs)
3 human 4141 MARS1 methionyl-tRNA synthetase 1 XR_002957327.1 85.9% (many diffs)
4 human 4141 MARS1 methionyl-tRNA synthetase 1 XM_006719398.4 73.9% 73.8% 0_1ins702;551G>A
5 mouse 216443 Mars methionine-tRNA synthetase NM_001003913.2 87% 89.3% (many diffs)
6 mouse 216443 Mars methionine-tRNA synthetase NM_001171582.1 86.2% 88.5% (many diffs)
7 mouse 216443 Mars methionine-tRNA synthetase XM_006513568.3 55.6% 56.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2766
ORF length:
2700
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag actgttcgtg agtgatggcg tcccgggttg cttgccggtg ctggccgccg
121ccgggagagc ccggggcaga gcagaggtgc tcatcagcac tgtaggcccg gaagattgtg
181tggtcccgtt cctgacccgg cctaaggtcc ctgtcttgca gctggatagc ggcaactacc
241tcttctccac tagtgcaatc tgccgatatt tttttttgtt atctggctgg gagcaagatg
301acctcactaa ccagtggctg gaatgggaag cgacagagct gcagccagct ttgtctgctg
361ccctgtacta tttagtggtc caaggcaaga agggggaaga tgttcttggt tcagtgcgga
421gagccctgac tcacattgac cacagcttga gtcgtcagaa ctgtcctttc ctggctgggg
481agacagaatc tctagccgac attgttttgt ggggagccct atacccatta ctgcaagatc
541ccgcctacct ccctgaggag ctgagtgccc tgcacagctg gttccagaca ctgagtaccc
601aggaaccatg tcagcgagct gcagagactg tactgaaaca gcaaggtgtc ctggctctcc
661ggccttacct ccaaaagcag ccccagccca gccccgctga gggaagggct gtcaccaatg
721agcctgagga ggaggagctg gctaccctat ctgaggagga gattgctatg gctgttactg
781cttgggagaa gggcctagaa agtttgcccc cgctgcggcc ccagcagaat ccagtgttgc
841ctgtggctgg agaaaggaat gtgctcatca ccagtgccct cccttacgtc aacaatgtcc
901cccaccttgg gaacatcatt ggttgtgtgc tcagtgccga tgtctttgcc aggtactctc
961gcctccgcca gtggaacacc ctctatctgt gtgggacaga tgagtatggt acagcaacag
1021agaccaaggc tctggaggag ggactaaccc cccaggagat ctgcgacaag taccacatca
1081tccatgctga catctaccgc tggtttaaca tttcgtttga tatttttggt cgcaccacca
1141ctccacagca gaccaaaatc acccaggaca ttttccagca gttgctgaaa cgaggttttg
1201tgctgcaaga tactgtggag caactgcgat gtgagcactg tgctcgcttc ctggctgacc
1261gcttcgtgga gggcgtgtgt cccttctgtg gctatgagga ggctcggggt gaccagtatg
1321acaagtgtgg caagctcatc aatgctgtcg agcttaagaa gcctcagtgt aaagtctgcc
1381gatcatgccc tgtggtgcag tcgagccagc acctgtttct ggacctgcct aagctggaga
1441agcgactgga ggagtggttg gggaggacat tgcctggcag tgactggaca cccaatgccc
1501agtttatcac ccgttcttgg cttcgggatg gcctcaagcc acgctgcata acccgagacc
1561tcaaatgggg aacccctgta cccttagaag gttttgaaga caaggtattc tatgtctggt
1621ttgatgccac tattggctat ctgtccatca cagccaacta cacagaccag tgggagagat
1681ggtggaagaa cccagagcaa gtggacctgt atcagttcat ggccaaagac aatgttcctt
1741tccatagctt agtctttcct tgctcagccc taggagctga ggataactat accttggtca
1801gccacctcat tgctacagag tacctgaact atgaggatgg gaaattctct aagagccgcg
1861gtgtgggagt gtttggggac atggcccagg acacggggat ccctgctgac atctggcgct
1921tctatctgct gtacattcgg cctgagggcc aggacagtgc tttctcctgg acggacctgc
1981tgctgaagaa taattctgag ctgcttaaca acctgggcaa cttcatcaac agagctggga
2041tgtttgtgtc taagttcttt gggggctatg tgcctgagat ggtgctcacc cctgatgatc
2101agcgcctgct ggcccatgtc accctggagc tccagcacta tcaccagcta cttgagaagg
2161ttcggatccg ggatgccttg cgcagtatcc tcaccatatc tcgacatggc aaccaatata
2221ttcaggtgaa tgagccctgg aagcggatta aaggcagtga ggctgacagg caacgggcag
2281gaacagtgac tggcttggca gtgaatatag ctgccttgct ctctgtcatg cttcagcctt
2341acatgcccac ggttagtgcc acaatccagg cccagctgca gctcccacct ccagccTGCA
2401GTATCCTGCT GACAAACTTC CTGTGTACCT TACCAGCAGG ACACCAGATT GGCACAGTCA
2461GTCCCTTGTT CCAAAAATTG GAAAATGACC AGATTGAAAG TTTAAGGCAG CGCTTTGGAG
2521GGGGCCAGGC AAAAACGTCC CCGAAGCCAG CAGTTGTAGA GACTGTTACA ACAGCCAAGC
2581CACAGCAGAT ACAAGCGCTG ATGGATGAAG TGACAAAACA AGGAAACATT GTCCGAGAAC
2641TGAAAGCACA AAAGGCAGAC AAGAACGAGG TTGCTGCGGA GGTGGCGAAA CTCTTGGATC
2701TAAAGAAACA GTTGGCTGTA GCTGAGGGGA AACCCCCTGA AGCCCCTAAA GGCAAGAAGA
2761AAAAGTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
2821TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
2881CTTGGCTTTA TATATCTTGT GGAAAGGACG ACCACTAGCC GGCTGCACGC GCTAGACGCG
2941TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)