Construct: ORF TRCN0000481024

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000892.1_s317c1
Derived from:
ccsbBroadEn_15375
DNA Barcode:
CAGAACCCATGGATGCACATGGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAPNS1 (826)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481024
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 826 CAPNS1 calpain small subunit 1 NM_001003962.3 99.8% 100% 147T>A
2 human 826 CAPNS1 calpain small subunit 1 NM_001302632.2 99.8% 100% 147T>A
3 human 826 CAPNS1 calpain small subunit 1 NM_001749.4 99.8% 100% 147T>A
4 human 826 CAPNS1 calpain small subunit 1 XM_005259295.1 82.3% 80.4% (many diffs)
5 human 826 CAPNS1 calpain small subunit 1 XM_005259296.1 82.3% 80.4% (many diffs)
6 human 826 CAPNS1 calpain small subunit 1 XM_024451732.1 75.4% 74.6% (many diffs)
7 human 826 CAPNS1 calpain small subunit 1 XM_011527359.1 74.3% 73.8% 0_1ins204;3_4delGGinsCA
8 human 826 CAPNS1 calpain small subunit 1 NM_001302633.2 58.2% 58.2% 0_1ins336
9 mouse 12336 Capns1 calpain, small subunit 1 NM_009795.4 88.4% 94.7% (many diffs)
10 mouse 12336 Capns1 calpain, small subunit 1 XM_006539488.2 88.4% 94.7% (many diffs)
11 mouse 12336 Capns1 calpain, small subunit 1 XM_011250419.2 69.6% 69.3% (many diffs)
12 mouse 12336 Capns1 calpain, small subunit 1 XM_011250420.1 52.4% 55.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
870
ORF length:
804
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt cctggttaac tcgttcttga agggcggcgg cggcggcggc gggggaggcg
121ggggcctggg tgggggcctg ggaaatgtgc ttggaggcct gatcagcggg gccgggggcg
181gcggcggcgg cggcggcggc ggcggcggtg gaggaggcgg cggtggcggt ggaacggcca
241tgcgcatcct aggcggagtc atcagcgcca tcagcgaggc ggctgcgcag tacaacccgg
301agcccccgcc cccacgcaca cattactcca acattgaggc caacgagagt gaggaggtcc
361ggcagttccg gagactcttt gcccagctgg ctggagatga catggaggtc agcgccacag
421aacTCATGAA CATTCTCAAT AAGGTTGTGA CACGACACCC TGATCTGAAG ACTGATGGTT
481TTGGCATTGA CACATGTCGC AGCATGGTGG CCGTGATGGA TAGCGACACC ACAGGCAAGC
541TGGGCTTTGA GGAATTCAAG TACTTGTGGA ACAACATCAA AAGGTGGCAG GCCATATACA
601AACAGTTCGA CACTGACCGA TCAGGGACCA TTTGCAGTAG TGAACTCCCA GGTGCCTTTG
661AGGCAGCAGG GTTCCACCTG AATGAGCATC TCTATAACAT GATCATCCGA CGCTACTCAG
721ATGAAAGTGG GAACATGGAT TTTGACAACT TCATCAGCTG CTTGGTCAGG CTGGACGCCA
781TGTTCCGTGC CTTCAAATCT CTTGACAAAG ATGGCACTGG ACAAATCCAG GTGAACATCC
841AGGAGTGGCT GCAGCTGACT ATGTATTCCT GCCCAACTTT CTTGTACAAA GTGGTTGATA
901TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
961CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACAGAA
1021CCCATGGATG CACATGGTTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1081tgaaagatt

Download FASTA (ORF) (Full)