Construct: ORF TRCN0000481097
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000478.1_s317c1
- Derived from:
- ccsbBroadEn_04133
- DNA Barcode:
- CCCGGCCGCTCGAGCCAGGATCTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLMP (79827)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481097
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79827 | CLMP | CXADR like membrane protein | NM_024769.5 | 100% | 100% | |
| 2 | mouse | 71566 | Clmp | CXADR-like membrane protein | NM_133733.4 | 87.3% | 92.5% | (many diffs) |
| 3 | mouse | 71566 | Clmp | CXADR-like membrane protein | XM_006510603.2 | 86.1% | 90.9% | (many diffs) |
| 4 | mouse | 71566 | Clmp | CXADR-like membrane protein | XM_006510602.3 | 81.6% | 85.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1185
- ORF length:
- 1119
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc cctcctcctt ctcctcttgc tagtttccta ctatgttgga accttgggga 121 ctcacactga gatcaagaga gtggcagagg aaaaggtcac tttgccctgc caccatcaac 181 tggggcttcc agaaaaagac actctggata ttgaatggct gctcaccgat aatgaaggga 241 accaaaaagt ggtgatcact tactccagtc gtcatgtcta caataacttg actgaggaac 301 agaagggccg agtggccttt gcttccaatt tcctggcagg agatgcctcc ttgcagattg 361 aacctctgaa gcccagtgat gagggccggt acacctgtaa ggttaagaat tcagggcgct 421 acgtgtggag ccatgtcatc ttaaaagtct tagtgagacc atccaagccc aagtgtgagt 481 tggaaggaga gctgacagaa ggaagtgacc tgactttgca gtgtgagtca tcctctggca 541 cagagcccat tgtgtattac tggcagcgaa tccgagagaa agagggagag gatgaacgtc 601 tgcctcccaa atctaggatt gactacaacc accctggacg agttctgctg cagaatctta 661 ccatgtccta cTCTGGACTG TACCAGTGCA CAGCAGGCAA CGAAGCTGGG AAGGAAAGCT 721 GTGTGGTGCG AGTAACTGTA CAGTATGTAC AAAGCATCGG CATGGTTGCA GGAGCAGTGA 781 CAGGCATAGT GGCTGGAGCC CTGCTGATTT TCCTCTTGGT GTGGCTGCTA ATCCGAAGGA 841 AAGACAAAGA AAGATATGAG GAAGAAGAGA GACCTAATGA AATTCGAGAA GATGCTGAAG 901 CTCCAAAAGC CCGTCTTGTG AAACCCAGCT CCTCTTCCTC AGGCTCTCGG AGCTCACGCT 961 CTGGTTCTTC CTCCACTCGC TCCACAGCAA ATAGTGCCTC ACGCAGCCAG CGGACACTGT 1021 CAACTGACGC AGCACCCCAG CCAGGGCTGG CCACCCAGGC ATACAGCCTA GTGGGGCCAG 1081 AGGTGAGAGG TTCTGAACCA AAGAAAGTCC ACCATGCTAA TCTGACCAAA GCAGAAACCA 1141 CACCCAGCAT GATCCCCAGC CAGAGCAGAG CCTTCCAAAC GGTCTGCCCA ACTTTCTTGT 1201 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1261 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1321 GAAAGGACGA CCCGGCCGCT CGAGCCAGGA TCTAACGCGT TAAGTCgaca atcaacctct 1381 ggattacaaa atttgtgaaa gatt