Construct: ORF TRCN0000481201

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008784.1_s317c1
Derived from:
ccsbBroadEn_07766
DNA Barcode:
TAGCGAAGTCCGGTATTGCCACGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RASSF1 (11186)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481201
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11186 RASSF1 Ras association domain fami... NM_007182.5 99.9% 99.7% 397G>T
2 human 11186 RASSF1 Ras association domain fami... NM_170714.2 98.7% 98.2% 251_262del;409G>T
3 human 11186 RASSF1 Ras association domain fami... NM_170713.3 72.1% 64.9% (many diffs)
4 human 11186 RASSF1 Ras association domain fami... XM_024453328.1 72.1% 64.9% (many diffs)
5 human 11186 RASSF1 Ras association domain fami... NM_001206957.1 55.5% 55.5% 0_1ins453
6 human 11186 RASSF1 Ras association domain fami... NM_170712.3 55.5% 55.5% 0_1ins453
7 human 11186 RASSF1 Ras association domain fami... XM_011533316.2 55.5% 55.5% 0_1ins453
8 mouse 56289 Rassf1 Ras association (RalGDS/AF-... NM_001243748.1 85.3% 90.8% (many diffs)
9 mouse 56289 Rassf1 Ras association (RalGDS/AF-... NM_019713.4 63.6% 55% (many diffs)
10 mouse 56289 Rassf1 Ras association (RalGDS/AF-... XM_006511770.2 47.3% 52.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1089
ORF length:
1020
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtcgggggag cctgagctca ttgagctgcg ggagctggca cccgctgggc
121gcgctgggaa gggccgcacc cggctggagc gtgccaacgc gctgcgcatc gcgcggggca
181ccgcgtgcaa ccccacacgg cagctggtcc ctggccgtgg ccaccgcttc cagcccgcgg
241ggcccgccac gcacacgtgg tgcgacctct gtggcgactt catctggggc gtcgtgcgca
301aaggcctgca gtgcgcgcat tgcaagttca cctgccacta ccgctgccgc gcgctcgtct
361gcctggactg ttgcgggccc cgggacctgg gctgggaacc cgcggtggag cgggacacga
421acgtggacga gcctgtggag tgggagacac ctgacctttc tcaatctgag attgagcaga
481agatcaagga gtacaatgcc cagatcaaca gcaacctctt catgagcttg aacaaggacg
541gttcttacac aggcttcatc aaggttcagc tgaagctggt gcgccctgtc tctgtgcccT
601CCAGCAAGAA GCCACCCTCC TTGCAGGATG CCCGGCGGGG CCCAGGACGG GGCACAAGTG
661TCAGGCGCCG CACTTCCTTT TACCTGCCCA AGGATGCTGT CAAGCACCTG CATGTGCTGT
721CACGCACAAG GGCACGTGAA GTCATTGAGG CCCTGCTGCG AAAGTTCTTG GTGGTGGATG
781ACCCCCGCAA GTTTGCACTC TTTGAGCGCG CTGAGCGTCA CGGCCAAGTG TACTTGCGGA
841AGCTGTTGGA TGATGAGCAG CCCCTGCGGC TGCGGCTCCT GGCAGGGCCC AGTGACAAGG
901CCCTGAGCTT TGTCCTGAAG GAAAATGACT CTGGGGAGGT GAACTGGGAC GCCTTCAGCA
961TGCCTGAACT ACATAACTTC CTACGTATCC TGCAGCGGGA GGAGGAGGAG CACCTCCGCC
1021AGATCCTGCA GAAGTACTCC TATTGCCGCC AGAAGATCCA AGAGGCCCTG CACGCCTGCC
1081CCCTTGGGTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1141CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1201TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATAGCGA AGTCCGGTAT TGCCACGCAC
1261GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)