Construct: ORF TRCN0000481623

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002307.1_s317c1
Derived from:
ccsbBroadEn_05905
DNA Barcode:
TGAAAAATGATCCACTTTGTCCTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BST1 (683)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481623
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 683 BST1 bone marrow stromal cell an... NM_004334.3 99.8% 100% 258G>C
2 human 683 BST1 bone marrow stromal cell an... XM_011513879.2 91.6% 90.2% (many diffs)
3 human 683 BST1 bone marrow stromal cell an... XM_005248185.2 90.7% 89.3% (many diffs)
4 human 683 BST1 bone marrow stromal cell an... XM_017008566.2 90.7% 88.2% (many diffs)
5 human 683 BST1 bone marrow stromal cell an... XM_017008565.2 90.3% 90.8% (many diffs)
6 human 683 BST1 bone marrow stromal cell an... XM_011513878.3 90.1% 89.6% (many diffs)
7 human 683 BST1 bone marrow stromal cell an... XM_005248186.2 89.5% 89.3% (many diffs)
8 human 683 BST1 bone marrow stromal cell an... XM_011513881.2 81.2% 80.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1020
ORF length:
954
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcccagggg tgcgcggcat cgcggctgct ccagctgctg ctgcagcttc
121tgcttctact gttgctgctg gcggcgggcg gggcgcgcgc gcggtggcgc ggggagggca
181ccagcgcaca cttgcgggac atcttcctgg gccgctgcgc cgagtaccgc gcactgctga
241gtcccgagca gcggaacaag aactgcacag ccatctggga agcctttaaa gtggcgctgg
301acaaggatcc ctgctccgtg ctcccctcag actatgacct ttttattaac ttgtccaggc
361actctattcc cagagataag tccctgttct gggaaaatag ccacctcctt gttaacagct
421ttgcagacaa cacccgtcgt tttatgcccc tgagcgatgt tctgtatggc agggttgcag
481atttcttgag ctggtgtcga cagaaaaatg actctggact cgattaccaa tcctgcccta
541catcagaaga ctgtgaaaat aaTCCTGTGG ATTCCTTTTG GAAAAGGGCA TCCATCCAGT
601ATTCCAAGGA TAGTTCTGGG GTGATCCACG TCATGCTGAA TGGTTCAGAG CCAACAGGAG
661CCTATCCCAT CAAAGGTTTT TTTGCAGATT ATGAAATTCC AAACCTCCAG AAGGAAAAAA
721TTACACGAAT CGAGATCTGG GTTATGCATG AAATTGGGGG ACCCAATGTG GAATCCTGCG
781GGGAAGGCAG CATGAAAGTC CTGGAAAAGA GGCTGAAGGA CATGGGGTTC CAGTACAGCT
841GTATTAATGA TTACCGACCA GTGAAGCTCT TACAGTGCGT GGACCACAGC ACCCATCCTG
901ACTGTGCCTT AAAGTCGGCA GCAGCCGCTA CTCAAAGAAA AGCCCCAAGT CTTTATACAG
961AACAAAGGGC GGGTCTTATC ATTCCCCTCT TTCTGGTGCT GGCTTCCAGG ACTCAACTGT
1021ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1081GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1141TTTATATATC TTGTGGAAAG GACGATGAAA AATGATCCAC TTTGTCCTCA CGCGTTAAGT
1201Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)