Construct: ORF TRCN0000487702
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019243.1_s317c1
- DNA Barcode:
- CAACAGCCAAGACTCGGACTTCTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTGER4 (5734)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487702
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | NM_000958.3 | 100% | 100% | |
| 2 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009658.1 | 64.2% | 57% | (many diffs) |
| 3 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009659.2 | 62.5% | 59.3% | (many diffs) |
| 4 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009656.2 | 61.5% | 55.7% | 867_958del;1050_1051ins506 |
| 5 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009657.1 | 60.4% | 58.2% | 867_924del;978_979ins544 |
| 6 | mouse | 19219 | Ptger4 | prostaglandin E receptor 4 ... | NM_001136079.2 | 85.7% | 87.7% | (many diffs) |
| 7 | mouse | 19219 | Ptger4 | prostaglandin E receptor 4 ... | NM_008965.2 | 81.6% | 83.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1539
- ORF length:
- 1464
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatgtcc actcccgggg tcaattcgtc cgcctccttg agccccgacc 121 ggctgaacag cccagtgacc atcccggcgg tgatgttcat cttcggggtg gtgggcaacc 181 tggtggccat cgtggtgctg tgcaagtcgc gcaaggagca gaaggagacg accttctaca 241 cgctggtatg tgggctggct gtcaccgacc tgttgggcac tttgttggtg agcccggtga 301 ccatcgccac gtacatgaag ggccaatggc ccgggggcca gccgctgtgc gagtacagca 361 ccttcattct gctcttcttc agcctgtccg gcctcagcat catctgcgcc atgagtgtcg 421 agcgctacct ggccatcaac catgcctatt tctacagcca ctacgtggac aagcgattgg 481 cgggcctcac gctctttgca gtctatgcgt ccaacgtgct cttttgcgcg ctgcccaaca 541 tgggtctcgg tagctcgcgg ctgcagtacc cagacacctg gtgcttcatc gactggacca 601 ccaacgtgac ggcgcacgcc gcctactcct acatgtacgc gggcttcagc tccttcctca 661 ttctcgccac cgtcctctgc aacgtgcttg tgtgcggcgc gctgctccgc atgcaccgcc 721 agttcatgcg ccgcacctcg ctgggcaccg agcagcacca cgcggccgcg gccgcctcgg 781 ttgcctcccg gggccacccc gctgcctccc cagccttgcc gcgcctcagc gactttcggc 841 gccgccggag cttccgccgc atcgcgggcg ccgagatcca gatggtcatc ttactcattg 901 ccacctccct ggtggtgctc atctgctcca tcccgctcgt ggtgcgagta ttcgtcaacc 961 agttatatca gccaagtttg gagcgagaag tcagtaaaaa tccagatttg caggccatcc 1021 gaattgcttc tgtgaacccc atcctagacc cctggatata tatcctcctg agaaagacag 1081 tgctcagtaa agcaatagag aagatcaaat gcctcttctg ccgcattggc gggtcccgca 1141 gggagcgctc cggacagcac tgctcagaca gtcaaaggac atcttctgcc atgtcaggcc 1201 actctcgctc cttcatctcc cgggagctga aggagatcag cagtacatct cagaccctcc 1261 tgccagacct ctcactgcca gacctcagtg aaaatggcct tGGAGGCAGG AATTTGCTTC 1321 CAGGTGTGCC TGGCATGGGC CTGGCCCAGG AAGACACCAC CTCACTGAGG ACTTTGCGAA 1381 TATCAGAGAC CTCAGACTCT TCACAGGGTC AGGACTCAGA GAGTGTCTTA CTGGTGGATG 1441 AGGCTGGTGG GAGCGGCAGG GCTGGGCCTG CCCCTAAGGG GAGCTCCCTG CAAGTCACAT 1501 TTCCCAGTGA AACACTGAAC TTATCAGAAA AATGTATAGA CCCAGCTTTC TTGTACAAAG 1561 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1621 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1681 ACGACAACAG CCAAGACTCG GACTTCTTAC GCGTTAAGTC gacaatcaac ctctggatta 1741 caaaatttgt gaaagatt