Construct: ORF TRCN0000487748
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019425.1_s317c1
- DNA Barcode:
- GCCGGCGACGTTAGTGAGACCTCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XPR1 (9213)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487748
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9213 | XPR1 | xenotropic and polytropic r... | NM_004736.4 | 99.9% | 99.8% | 2088_2089insA |
| 2 | human | 9213 | XPR1 | xenotropic and polytropic r... | NM_001135669.2 | 90.6% | 90.5% | 1303_1304ins195;1893_1894insA |
| 3 | human | 9213 | XPR1 | xenotropic and polytropic r... | NM_001328662.2 | 72.1% | 71.7% | 1500_1501ins23;1504A>G;1509_1509delGins558 |
| 4 | human | 9213 | XPR1 | xenotropic and polytropic r... | NR_137330.2 | 20.2% | 1_180del;1313_1314ins367;1902_8117delinsA | |
| 5 | mouse | 19775 | Xpr1 | xenotropic and polytropic r... | NM_011273.2 | 92.2% | 95.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2160
- ORF length:
- 2091
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat gaagttcgcc gagcacctct ccgcgcacat cactcccgag tggaggaagc 121 aatacatcca gtatgaggct ttcaaggata tgctgtattc agctcaggac caggcacctt 181 ctgtggaagt tacagatgag gacacagtaa agaggtattt tgccaagttt gaagagaagt 241 ttttccaaac ctgtgaaaaa gaacttgcca aaatcaacac attttattca gagaagctcg 301 cagaggctca gcgcaggttt gctacacttc agaatgagct tcagtcatca ctggatgcac 361 agaaagaaag cactggtgtt actacgctgc gacaacgcag aaagccagtc ttccacttgt 421 cccatgagga acgtgtccaa catagaaata ttaaagacct taaactggcc ttcagtgagt 481 tctacctcag tctaatcctg ctgcagaact atcagaatct gaattttaca gggtttcgaa 541 aaatcctgaa aaagcatgac aagatcctgg aaacatctcg tggagcagat tggcgagtgg 601 ctcacgtaga ggtggcccca ttttatacat gcaagaaaat caaccagctt atctctgaaa 661 ctgaggctgt agtgaccaat gaacttgaag atggtgacag acaaaaggct atgaagcgtt 721 tacgtgtccc ccctttggga gctgctcagc ctgcaccagc atggactact tttagagttg 781 gcctattttg tggaatattc attgtactga atattaccct tgtgcttgcc gctgtattta 841 aacttgaaac agatagaagt atatggccct tgataagaat ctatcggggt ggctttcttc 901 tgattgaatt cctttttcta ctgggcatca acacgtatgg ttggagacag gctggagtaa 961 accatgtact catctttgaa cttaatccga gaagcaattt gtctcatcaa catctctttg 1021 agattgctgg attcctcggg atattgtggt gcctgagcct tctggcatgc ttctttgctc 1081 caattagtgt catccccaca tatgtgtatc cacttgccct ttatggattt atggttttct 1141 tccttatcaa ccccaccaaa actttctact ataaatcccg gttttggctg cttaaactgc 1201 tgtttcgagt atttacagcc cccttccata aggtaggctt tgctgatttc tggctggcgg 1261 atcagctgaa cagcctgtca gtgatactga tggacctgga atatatgatc tgcttctaca 1321 gtttggagct caaatgggat gaaagtaagg gcctgttgcc aaataattca gaagaatcag 1381 gaatttgcca caaatataca tatggtgtgc gggccattgt tcagtgcatt cctgcttggc 1441 ttcgcttcat ccagtgcctg cgccgatatc gagacacaaa aagggccttt cctcatttag 1501 ttaatgctgg caaatactcc acaactttct tcatggtgac gtttgcagcc ctttacagca 1561 ctcacaaaga acgaggtcac tcggacacta tggtgttctt ttacctgtgg attgtctttt 1621 atatcatcag ttcctgctat accctcatct gggatctcaa gatggactgg ggtctcttcg 1681 ataagaatgc tggagagaac actttcctcc gggaagagat tgtatacccc caaaaagcct 1741 actactactg tgccataata gaggatgtga ttctgcgctt tgcttggact atccaaatct 1801 cgattacctc tacaactttg ttgcctcatt ctggggacat cattgctact gtctttgccc 1861 cacttgaggt ttTCCGGCGA TTTGTGTGGA ACTTCTTCCG CCTGGAGAAT GAACATCTGA 1921 ATAACTGTGG TGAATTCCGT GCTGTGCGGG ACATCTCTGT GGCCCCCCTG AACGCAGATG 1981 ATCAGACTCT CCTAGAACAG ATGATGGACC AGGATGATGG GGTACGAAAC CGCCAGAAGA 2041 ATCGGTCATG GAAGTACAAC CAGAGCATAT CCCTGCGCCG GCCTCGCCTC GCTTCTCAAT 2101 CCAAGGCTCG TGACACTAAG GTATTGATAG AAGACACAGA TGATGAAGCT AACACTAACC 2161 CAGCTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 2221 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 2281 ATATATCTTG TGGAAAGGAC GAGCCGGCGA CGTTAGTGAG ACCTCGACGC GTTAAGTCga 2341 caatcaacct ctggattaca aaatttgtga aagatt