Construct: ORF TRCN0000487772
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020107.1_s317c1
- DNA Barcode:
- AAAATCACCTCTCCTATTAATCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACVR1C (130399)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487772
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_145259.3 | 99.6% | 99.3% | (many diffs) |
| 2 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111031.1 | 89.5% | 89.2% | (many diffs) |
| 3 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111032.2 | 83.4% | 83.1% | (many diffs) |
| 4 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111033.2 | 67.9% | 67.8% | (many diffs) |
| 5 | mouse | 269275 | Acvr1c | activin A receptor, type IC | NM_001111030.1 | 85.8% | 92.3% | (many diffs) |
| 6 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_006498085.3 | 77.2% | 84.2% | (many diffs) |
| 7 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_011239108.2 | 77.2% | 84.2% | (many diffs) |
| 8 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_006498086.3 | 72.9% | 79.1% | (many diffs) |
| 9 | mouse | 269275 | Acvr1c | activin A receptor, type IC | NM_001033369.3 | 64.4% | 71% | (many diffs) |
| 10 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XR_374097.3 | 17.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1551
- ORF length:
- 1482
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat gacccgggcg ctctgctcag cgctccgcca ggctctcctg ctgctcgcag 121 cggccgccga gctctcgcca ggactgaagt gtgtatgtct tttgtgtgat tcttcaaact 181 ttacctgcca aacagaagga gcatgttggg catcagtcat gctaaccaat ggaaaagagc 241 aggtgatcaa atcctgtgtc tcccttccag aactgaatgc tcaagtcttc tgtcatagtt 301 ccaacaatgt taccaaaacc gaatgctgct tcacagattt ttgcaacaac ataacactgc 361 accttccaac agcatcacca aatgccccaa aacttggacc catggagctg gccatcatta 421 ttactgtgcc tgtttgcctc ctgtccatag ctgcgatgct gacagtatgg gcatgccagg 481 gtcgacagtg ctcctacagg aagaaaaaga gaccaaatgt ggaggaacca ctctctgagt 541 gcaatctggt aaatgctgga aaaactctga aagatctgat ttatgatgtg accgcctctg 601 gatctggctc tggtctacct ctgttggttc aaaggacaat tgcaaggacg attgtgcttc 661 aggaaatagt aggaaaaggt agatttggtg aggtgtggca tggaagatgg tgtggggaag 721 atgtggctgt gaaaatattc tcctccagag atgaaagata ttggtttcgt gaggcagaaa 781 tttaccagac ggtcatgctg cgacatgaaa acatccttgg tttcattgct gctgacaaca 841 aagataatgg aacttggact caactttggc tggtatctga atatcatgaa cagggctcct 901 tatatgacta tttgaataga aatatagtga ccatggctgg aatgatcaag ctggcgctct 961 caattgctag tggtctggca caccttcata tggagattgt tggtacacaa ggtaaacctg 1021 ctattgctca tcgagacata aaatcaaaga atatcttagt aaaaaagtgt gaaacttgtg 1081 ccatagcgga cttagggttg gctgtgaagc atgattcaat actgaacact atcgacatac 1141 ctcagaatcc taaagtggga accaagaggt atatggctcc tgaaatgctt gatgatacaa 1201 tgaatgtgaa tatctttgag tccttcaaac gagctgacat ctattctgtt ggtctggttt 1261 actgggaaat agcccGGAGG TGTTCAGTCG GAGGAATTGT TGAGGAGTAC CAATTGCCTT 1321 ATTATGACAT GGTGCCTTCA GATCCCTCGA TAGAGGAAAT GAGAAAGGTT GTTTGTGACC 1381 AGAAGTTTCG ACCAAGTATC CCAAACCAGT GGCAAAGTTG TGAAGCACTC CGAGTCATGG 1441 GGAGAATAAT GCGTGAGTGT TGGTATGCCA ACGGAGCGGC CCGCCTAACT GCTCTTCGTA 1501 TTAAGAAGAC TATATCTCAA CTTTGTGTCA AAGAAGACTG CAAAGCCGAC CCAGCTTTCT 1561 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 1621 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 1681 GTGGAAAGGA CGAAAAATCA CCTCTCCTAT TAATCCTACG CGTTAAGTCg acaatcaacc 1741 tctggattac aaaatttgtg aaagatt