Construct: ORF TRCN0000487813
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020091.1_s317c1
- DNA Barcode:
- ATCGCGGACGGGTAACACGACAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MST1R (4486)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487813
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4486 | MST1R | macrophage stimulating 1 re... | NM_002447.4 | 99.9% | 99.9% | (many diffs) |
| 2 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_005265170.4 | 99.8% | 99.8% | (many diffs) |
| 3 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533739.2 | 96.9% | 97% | (many diffs) |
| 4 | human | 4486 | MST1R | macrophage stimulating 1 re... | NM_001244937.3 | 96.4% | 96.4% | (many diffs) |
| 5 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533740.2 | 96.3% | 96.3% | (many diffs) |
| 6 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533741.2 | 94.9% | 94.9% | (many diffs) |
| 7 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533742.2 | 94.3% | 89.4% | (many diffs) |
| 8 | human | 4486 | MST1R | macrophage stimulating 1 re... | XR_001740155.1 | 93.2% | (many diffs) | |
| 9 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533743.2 | 92.6% | 92.6% | (many diffs) |
| 10 | human | 4486 | MST1R | macrophage stimulating 1 re... | NM_001318913.1 | 92.3% | 92.3% | (many diffs) |
| 11 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533744.2 | 92.2% | 92.2% | (many diffs) |
| 12 | human | 4486 | MST1R | macrophage stimulating 1 re... | XR_940428.2 | 86.7% | (many diffs) | |
| 13 | human | 4486 | MST1R | macrophage stimulating 1 re... | NR_134919.2 | 86.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 108
- ORF end:
- 4308
- ORF length:
- 4200
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggctccgc ggccgccccc ttcaccgaat tctcccagct cgcctcgatg gagctcctcc 121 cgccgctgcc tcagtccttc ctgttgctgc tgctgttgcc tgccaagccc gcggcgggcg 181 aggactggca gtgcccgcgc accccctacg cggcctctcg cgactttgac gtgaagtacg 241 tggtgcccag cttctccgcc ggaggcctgg tacaggccat ggtgacctac gagggcgaca 301 gaaatgagag tgctgtgttt gtagccatac gcaatcgcct gcatgtgctt gggcctgacc 361 tgaagtctgt ccagagcctg gccacgggcc ctgctggaga ccctggctgc cagacgtgtg 421 cagcctgtgg cccaggaccc cacggccctc ccggtgacac agacacaaag gtgctggtgc 481 tggatcccgc gctgcctgcg ctggtcagtt gtggctccag cctgcagggc cgctgcttcc 541 tgcatgacct agagccccaa gggacagccg tgcatctggc agcgccagcc tgcctcttct 601 cagcccacca taaccggccc gatgactgcc ccgactgtgt ggccagccca ttgggcaccc 661 gtgtaactgt ggttgagcaa ggccaggcct cctatttcta cgtggcatcc tcactggacg 721 cagccgtggc tgccagcttc agcccacgct cagtgtctat caggcgtctc aaggctgacg 781 cctcgggatt cgcaccgggc tttgtggcgt tgtcagtgct gcccaagcat cttgtctcct 841 acagtattga atacgtgcac agcttccaca cgggagcctt cgtatacttc ctgactgtac 901 agccggccag cgtgacagat gatcctagtg ccctgcacac acgcctggca cggcttagcg 961 ccactgagcc agagttgggt gactatcggg agctggtcct cgactgcaga tttgctccaa 1021 aacgcaggcg ccggggggcc ccagaaggcg gacagcccta ccctgtgctg cgggtggccc 1081 actccgctcc agtgggtgcc caacttgcca ctgagctgag catcgccgag ggccaggaag 1141 tactatttgg ggtctttgtg actggcaagg atggtggtcc tggcgtgggc cccaactctg 1201 tcgtctgtgc cttccccatt gacctgctgg acacactaat tgatgagggt gtggagcgct 1261 gttgtgaatc cccagtccat ccaggcctcc ggcgaggcct cgacttcttc cagtcgccca 1321 gtttttgccc caacccgcct ggcctggaag ccctcagccc caacaccagc tgccgccact 1381 tccctctgct ggtcagtagc agcttctcac gtgtggacct attcaatggg ctgttgggac 1441 cagtacaggt cactgcattg tatgtgacac gccttgacaa cgtcacagtg gcacacatgg 1501 gcacaatgga tgggcgtatc ctgcaggtgg agctggtcag gtcactaaac tacttgctgt 1561 atgtgtccaa cttctcactg ggtgacagtg ggcagcccgt gcagcgggat gtcagtcgtc 1621 ttggggacca cctactcttt gcctctgggg accaggtttt ccaggtacct atccaaggcc 1681 ctggctgccg ccacttcctg acctgtgggc gttgcctaag ggcatggcat ttcatgggct 1741 gtggctggtg tgggaacatg tgcggccagc agaaggagtg tcctggctcc tggcaacagg 1801 accactgccc acctaagctt actgagttcc acccccacag tggacctcta aggggcagta 1861 caaggctgac cctgtgtggc tccaacttct accttcaccc ttctggtctg gtgcctgagg 1921 gaacccatca ggtcactgtg ggccaaagtc cctgccggcc actgcccaag gacagctcaa 1981 aactcagacc agtgccccgg aaagactttg tagaggagtt tgagtgtgaa ctggagccct 2041 tgggcaccca ggcagtgggg cctaccaacg tcagcctcac cgtgactaac atgccaccgg 2101 gcaagcactt ccgggtagac ggcacctccg tgctgagagg cttctctttc atggagccag 2161 tgctgatagc agtgcaaccc ctctttggcc cacgggcagg aggcacctgt ctcactctcg 2221 agggccagag tctgtctgta ggcaccagcc gggctgtgct ggtcaatggg actgagtgtc 2281 tgctagcacg ggtcagtgag gggcagcttt tatgtgccac accccctggg gccacggtgg 2341 ccagtgtccc ccttagcctg caggtggggg gtgcccaggt acctggttcc tggaccttcc 2401 agtacagaga agaccctgtc gtgctaagca tcagccccaa ctgtggctac atcaactccc 2461 acatcaccat ctgtggccag catctaactt cagcatggca cttagtgctg tcattccatg 2521 acgggcttag ggcagtggaa agcaggtgtg agaggcagct tccagagcag cagctgtgcc 2581 gccttcctga atatgtggtc cgagaccccc agggatgggt ggcagggaat ctgagtgccc 2641 gaggggatgg agctgctggc tttacactgc ctggctttcg cttcctaccc ccaccccatc 2701 cacccagtgc caacctagtt ccactgaagc ctgaggagca tgccattaag tttgagtata 2761 ttgggctggg cgctgtggct gactgtgtgg gtatcaacgt gaccgtgggt ggtgagagct 2821 gccagcacga gttccggggg gacatggttg tctgccccct gcccccatcc ctgcagcttg 2881 gccaggatgg tgccccattg caggtctgcg tagatggtga atgtcatatc ctgggtagag 2941 tggtgcggcc agggccagat ggggtcccac agagcacgct ccttggtatc ctgctgcctt 3001 tgctgctgct tgtggctgca ctggcgactg cactggtctt cagctactgg tggcggagga 3061 agcagctagt tcttcctccc aacctgaatg acctggcatc cctggaccag actgctggag 3121 ccacacccct gcctattctg tactcgggct ctgactacag aagtggcctt gcactccctg 3181 ccattgatgg tctggattcc accacttgtg tccatggagc atccttctcc gatagtgaag 3241 atgaatcctg tgtgccactg ctgcggaaag agtccatcca gctaagggac ctggactctg 3301 cgctcttggc tgaggtcaag gatgtgctga ttccccatga gcgggtggtc acccacagtg 3361 accgagtcat tggcaaaggc cactttggag ttgtctacca cggagaatac atagaccagg 3421 cccagaatcg aatccaatgt gccatcaagt cactaagtcg aatcacagag atgcagcagg 3481 tggaggcctt cctgcgagag gggctgctca tgcgtggcct gaaccacccg aatgtgctgg 3541 ctctcattgg tatcatgttg ccacctgagg gcctgcccca tgtgctgctg ccctatatgt 3601 gccacggtga cctgctccag ttcatccgct cacctcagcg gaaccccacc gtgaaggacc 3661 tcatcagctt tggcctgcag gtagcccgcg gcatggagta cctggcagag cagaagtttg 3721 tgcacaggga cctggctgcg cggaactgca tgctggacga gtcattcaca gtcaaggtgg 3781 ctgactttgg tttggcccgc gacatcctgg acagggagta ctatagtgtt caacagcatc 3841 gccacgctcg cctacctgtg aagtggatgg cgctggagag cctgcagacc tatagattta 3901 ccaccaagtc tgatgtgtgg tcatttggtg tgctgctgtg ggaactgctg acacggggtg 3961 ccccaccata ccgccacatt gacccttttg accttaccca cttcctggcc cagggtcggc 4021 gcctgcccca gcctgagtat tgccctgatt ctctgtacca agtgatgcag caatgctggg 4081 aggcagaccc agcagtgcga cccaccttcG GAGTACTAGT GGGGGAGGTG GAGCAGATAG 4141 TGTCTGCACT GCTTGGGGAC CATTATGTGC AGCTGCCAGC AACCTACATG AACTTGGGCC 4201 CCAGCACCTC GCATGAGATG AATGTGCGTC CAGAACAGCC GCAGTTCTCA CCCATGCCAG 4261 GGAATGTACG CCGGCCCCGG CCACTCTCAG AGCCTCCTCG GCCCACTAAG GGTGGGCGCG 4321 CCGACCCAGC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 4381 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 4441 GGCTTTATAT ATCTTGTGGA AAGGACGAAT CGCGGACGGG TAACACGACA ATACGCGTTA 4501 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt