Construct: ORF TRCN0000488008
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020663.1_s317c1
- DNA Barcode:
- CAGCAATTTACAGCCACCATTAAC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- BMPR1B (658)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488008
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001203.3 | 100% | 100% | |
| 2 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001256792.1 | 100% | 100% | |
| 3 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001256794.1 | 100% | 100% | |
| 4 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_011532201.2 | 100% | 100% | |
| 5 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008558.1 | 100% | 100% | |
| 6 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008559.1 | 100% | 100% | |
| 7 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008560.1 | 100% | 100% | |
| 8 | human | 658 | BMPR1B | bone morphogenetic protein ... | XM_017008561.1 | 100% | 100% | |
| 9 | human | 658 | BMPR1B | bone morphogenetic protein ... | NM_001256793.2 | 94.3% | 94.3% | 1_90del |
| 10 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277216.1 | 89.2% | 98.2% | (many diffs) |
| 11 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277217.1 | 89.2% | 98.2% | (many diffs) |
| 12 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277218.1 | 89.2% | 98.2% | (many diffs) |
| 13 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_007560.4 | 89.2% | 98.2% | (many diffs) |
| 14 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500939.3 | 89.2% | 98.2% | (many diffs) |
| 15 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500940.3 | 89.2% | 98.2% | (many diffs) |
| 16 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500942.1 | 89.2% | 98.2% | (many diffs) |
| 17 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500943.3 | 89.2% | 98.2% | (many diffs) |
| 18 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_006500944.2 | 89.2% | 98.2% | (many diffs) |
| 19 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_011240001.1 | 89.2% | 98.2% | (many diffs) |
| 20 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | XM_011240002.2 | 89.2% | 98.2% | (many diffs) |
| 21 | mouse | 12167 | Bmpr1b | bone morphogenetic protein ... | NM_001277220.1 | 87.3% | 88.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1578
- ORF length:
- 1506
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgcttttg cgaagtgcag gaaaattaaa tgtgggcacc aagaaagagg 121 atggtgagag tacagccccc accccccgtc caaaggtctt gcgttgtaaa tgccaccacc 181 attgtccaga agactcagtc aacaatattt gcagcacaga cggatattgt ttcacgatga 241 tagaagagga tgactctggg ttgcctgtgg tcacttctgg ttgcctagga ctagaaggct 301 cagattttca gtgtcgggac actcccattc ctcatcaaag aagatcaatt gaatgctgca 361 cagaaaggaa cgaatgtaat aaagacctac accctacact gcctccattg aaaaacagag 421 attttgttga tggacctata caccacaggg ctttacttat atctgtgact gtctgtagtt 481 tgctcttggt ccttatcata ttattttgtt acttccggta taaaagacaa gaaaccagac 541 ctcgatacag cattgggtta gaacaggatg aaacttacat tcctcctgga gaatccctga 601 gagacttaat tgagcagtct cagagctcag gaagtggatc aggcctccct ctgctggtcc 661 aaaggactat agctaagcag attcagatgg tgaaacagat tggaaaaggt cgctatgggg 721 aagtttggat gggaaagtgg cgtggcgaaa aggtagctgt gaaagtgttc ttcaccacag 781 aggaagccag ctggttcaga gagacagaaa tatatcagac agtgttgatg aggcatgaaa 841 acattttggg tttcattgct gcagatatca aagggacagg gtcctggacc cagttgtacc 901 taatcacaga ctatcatgaa aatggttccc tttatgatta tctgaagtcc accaccctag 961 acgctaaatc aatgctgaag ttagcctact cttctgtcag tggcttatgt catttacaca 1021 cagaaatctt tagtactcaa ggcaaaccag caattgccca tcgagatctg aaaagtaaaa 1081 acattctggt gaagaaaaat ggaacttgct gtattgctga cctgggcctg gctgttaaat 1141 ttattagtga tacaaatgaa gttgacatac cacctaacac tcgagttggc accaaacgct 1201 atatgcctcc agaagtgttg gacgagagct tgaacagaaa tcacttccag tcttacatca 1261 tggctgacat gtatagtttt ggcctcaTCC TTTGGGAGGT TGCTAGGAGA TGTGTATCAG 1321 GAGGTATAGT GGAAGAATAC CAGCTTCCTT ATCATGACCT AGTGCCCAGT GACCCCTCTT 1381 ATGAGGACAT GAGGGAGATT GTGTGCATCA AGAAGTTACG CCCCTCATTC CCAAACCGGT 1441 GGAGCAGTGA TGAGTGTCTA AGGCAGATGG GAAAACTCAT GACAGAATGC TGGGCTCACA 1501 ATCCTGCATC AAGGCTGACA GCCCTGCGGG TTAAGAAAAC ACTTGCCAAA ATGTCAGAGT 1561 CCCAGGACAT TAAACTCTAG AACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 1621 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 1681 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACAGC AATTTACAGC 1741 CACCATTAAC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt