Construct: ORF TRCN0000488084

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021786.1_s317c1
DNA Barcode:
GCGCTGGTGGTCCTGCATCGCGTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
SLC25A18 (83733)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488084
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83733 SLC25A18 solute carrier family 25 me... NM_001303484.1 100% 100%
2 human 83733 SLC25A18 solute carrier family 25 me... NM_031481.3 100% 100%
3 human 83733 SLC25A18 solute carrier family 25 me... XM_011546151.2 100% 100%
4 human 83733 SLC25A18 solute carrier family 25 me... XM_011546152.1 100% 100%
5 human 83733 SLC25A18 solute carrier family 25 me... XM_011546153.3 100% 100%
6 human 83733 SLC25A18 solute carrier family 25 me... XM_011546154.2 100% 100%
7 human 83733 SLC25A18 solute carrier family 25 me... XM_017028968.1 100% 100%
8 human 83733 SLC25A18 solute carrier family 25 me... XM_017028970.2 86.3% 86.3% 0_1ins129
9 human 83733 SLC25A18 solute carrier family 25 me... XM_017028971.2 86.3% 86.3% 0_1ins129
10 human 83733 SLC25A18 solute carrier family 25 me... XM_017028972.2 86.3% 86.3% 0_1ins129
11 human 83733 SLC25A18 solute carrier family 25 me... XM_017028973.2 86.3% 86.3% 0_1ins129
12 human 83733 SLC25A18 solute carrier family 25 me... XM_017028974.2 86.3% 86.3% 0_1ins129
13 human 83733 SLC25A18 solute carrier family 25 me... XM_017028975.2 86.3% 86.3% 0_1ins129
14 human 83733 SLC25A18 solute carrier family 25 me... XM_011546150.2 86% 86% 1_153del
15 human 83733 SLC25A18 solute carrier family 25 me... XM_011546149.2 76.8% 76.8% 1_285del
16 human 83733 SLC25A18 solute carrier family 25 me... XR_002958717.1 22.4% (many diffs)
17 human 83733 SLC25A18 solute carrier family 25 me... XR_951210.3 18.5% 1_1496del;1783_1784ins119;2323_4345del
18 mouse 71803 Slc25a18 solute carrier family 25 (m... NM_001081048.2 83.9% 86.5% (many diffs)
19 mouse 71803 Slc25a18 solute carrier family 25 (m... XM_006506649.3 83.9% 86.5% (many diffs)
20 mouse 71803 Slc25a18 solute carrier family 25 (m... XM_006506650.3 83.9% 86.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1014
ORF length:
945
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gacccaccag gatctgagca tcacagccaa actcatcaat ggaggtgtag
121cagggctcgt gggggtgacc tgcgtgttcc ccatcgactt ggccaagact cgcctgcaga
181accagcatgg gaaagccatg tacaaaggaa tgatcgactg cctgatgaag acggctcggg
241cggagggctt cttcggcatg taccgagggg ctgcagtgaa cctcactctg gtcactccag
301agaaggccat caagctggcg gccaacgact ttttccggcg gctgctcatg gaagatggga
361tgcagcggaa cctgaagatg gagatgcttg ccgggtgtgg ggctgggatg tgccaggtcg
421tggtgacctg tcccatggaa atgctcaaga ttcagctgca ggatgctgga cgcctggccg
481tccatcatca gggctcggcc tcagcaccct ccacctccag gtcctacaca actggttcgg
541cttccaccca caggcgcccc tctgccaccc tcattgcctg ggagctgctc cgcactcagg
601gcctggctgg gctctacagg ggcctgggtg ccactctcct cagagacatt cctttctcca
661tcatctactt cccactgttt gccaacctta acaacctggg gttcaacgag ctcgccggta
721aggcgTCCTT TGCACATTCC TTCGTGTCAG GCTGTGTGGC AGGTTCCATA GCTGCGGTCG
781CAGTGACGCC TCTAGATGTT CTGAAAACTC GAATCCAAAC CCTCAAGAAA GGCCTGGGCG
841AGGACATGTA CAGTGGGATC ACCGACTGTG CCAGGAAACT CTGGATTCAG GAGGGACCAT
901CTGCCTTCAT GAAAGGCGCT GGCTGCCGGG CACTGGTCAT AGCACCTCTC TTTGGGATTG
961CTCAAGGGGT CTATTTTATT GGGATTGGAG AGCGCATCTT AAAGTGTTTT GACTAGGACC
1021CAGCTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1081TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1141ATATATCTTG TGGAAAGGAC GAGCGCTGGT GGTCCTGCAT CGCGTTACGC GTTAAGTCga
1201caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)