Construct: ORF TRCN0000488085
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021729.1_s317c1
- DNA Barcode:
- GATTCACTGCCTCCTGAAGAAAGG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LTK (4058)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488085
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4058 | LTK | leukocyte receptor tyrosine... | NM_206961.4 | 50.1% | .9% | 1_1201del |
| 2 | human | 4058 | LTK | leukocyte receptor tyrosine... | XM_011521557.2 | 48.8% | .9% | 1_1264del |
| 3 | human | 4058 | LTK | leukocyte receptor tyrosine... | XM_024449919.1 | 48.8% | .9% | 1_1267del |
| 4 | human | 4058 | LTK | leukocyte receptor tyrosine... | XM_017022182.1 | 48.1% | .9% | 1_1303del |
| 5 | human | 4058 | LTK | leukocyte receptor tyrosine... | NM_001135685.2 | 47.6% | 1% | (many diffs) |
| 6 | human | 4058 | LTK | leukocyte receptor tyrosine... | NM_002344.6 | 46.6% | .9% | 1_1384del |
| 7 | human | 4058 | LTK | leukocyte receptor tyrosine... | XM_024449918.1 | 46.3% | .9% | 1_1399del |
| 8 | human | 4058 | LTK | leukocyte receptor tyrosine... | XM_011521556.2 | 45.7% | .9% | 1_1432del |
| 9 | human | 4058 | LTK | leukocyte receptor tyrosine... | XM_017022181.1 | 45.4% | .8% | 1_1447del |
| 10 | human | 4058 | LTK | leukocyte receptor tyrosine... | XM_017022183.1 | 43.9% | .9% | (many diffs) |
| 11 | human | 4058 | LTK | leukocyte receptor tyrosine... | XR_001751277.1 | 38.7% | 1_1625del;1780_1781ins91;2743_2794del | |
| 12 | human | 4058 | LTK | leukocyte receptor tyrosine... | XR_001751279.1 | 17.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 208
- ORF end:
- 268
- ORF length:
- 60
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttgcc gagccctgag cttgagctga gcaagcttcg aacctctgcc atcaggacag 121 cccccaatcc ctattattgc caggtggggc ttggcccggc ccagtcctgg cctctgccac 181 caggtgtcac cgaggtttcc ccagccaatg ttactctgct cagagccctg ggccatggtg 241 cctttgggga ggtgtatgag ggactggtaa ttggccttcc tggggactcc agtcccctgc 301 aggtagctat caagaccctg ccagaactct gctcgcctca ggatgagctg gatttcctca 361 tggaggccct catcatcagc aagtttcgcc atcagaacat tgtgcggtgt gtggggctca 421 gcctcagggc cacccctcgc ctcattctgc tggaactgat gtctggaggg gacatgaaga 481 gtttcctgag gcacagtcgg ccacacctgg gccagccatc acctctggtc atgcgggacc 541 tgctgcaact ggcccaggac atagcccagg gctgccacta cctggaggaa aatcacttca 601 tccacaggga tattgccgcc cggaactgcc tgctgagctg cgctggaccc agccgagtgg 661 ccaagattgg ggactttggg atggcacgag atatctaccg ggccagttat taccgcaggg 721 gggaccgggc cttgctccca gtcaagtgga tgcccccaga ggccttcctg gagggcatct 781 tcacatccaa gacagattcc tggtcttttg gggtgctgct ctgggagatc ttctcactgg 841 gctacatgcc ctatcctggg cgcaccaacc aggaggtgct ggacttcgtc gttggaggag 901 gccggatgga ccctcctagg ggctgcccag ggcctgtgta ccgcatcatg acccagtgtt 961 ggcagcacga gccTGAGCTC CGCCCTAGCT TTGCCAGCAT CTTGGAGCGT CTGCAGTACT 1021 GCACTCAGGA CCCGGATGTG CTGAATTCAC TCCTGCCAAT GGAGCTGGGG CCCACCCCAG 1081 AGGAGGAAGG GACTTCTGGG CTGGGGAACA GATCTTTGGA GTGCCTAAGA CCCCCACAGC 1141 CCCAGGAACT GAGTCCAGAG AAGTTGAAAA GCTGGGGAGG TAGCCCTCTT GGCCCCTGGC 1201 TGTCCTCTGG CCTCAAGCCC CTCAAATCCA GGGGCCTCCA ACCTCAGAAC CTTTGGAATC 1261 CCACTTATCG CTCCTGAGAC CCAGCTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1321 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1381 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGATTCAC TGCCTCCTGA 1441 AGAAAGGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt