Construct: ORF TRCN0000488102
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021994.1_s317c1
- DNA Barcode:
- TATCTGAATGTGGGGGTCGCTCCC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- NPY5R (4889)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488102
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_011532015.2 | 97% | 96.7% | (many diffs) |
| 2 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_017008255.1 | 97% | 96.7% | (many diffs) |
| 3 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_017008256.1 | 97% | 96.7% | (many diffs) |
| 4 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | NM_001317091.1 | 96.6% | 96.5% | 0_1ins41;3_3delGinsTCGCC |
| 5 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | NM_001317092.1 | 96.6% | 96.5% | 0_1ins41;3_3delGinsTCGCC |
| 6 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | NM_006174.4 | 96.6% | 96.5% | 0_1ins41;3_3delGinsTCGCC |
| 7 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_005263038.3 | 96.6% | 96.5% | 0_1ins41;3_3delGinsTCGCC |
| 8 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_011532017.2 | 96.6% | 96.5% | 0_1ins41;3_3delGinsTCGCC |
| 9 | mouse | 18168 | Npy5r | neuropeptide Y receptor Y5 | NM_016708.3 | 78.4% | 82.1% | (many diffs) |
| 10 | mouse | 18168 | Npy5r | neuropeptide Y receptor Y5 | XM_006509598.3 | 78.4% | 82.1% | (many diffs) |
| 11 | mouse | 18168 | Npy5r | neuropeptide Y receptor Y5 | XM_006509599.3 | 78.4% | 82.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1449
- ORF length:
- 1380
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat gaagacgatc atcgccctga gctacatctt ctgcctggta ttcgccgatt 121 tagagctcga cgagtattat aacaagacac ttgccacaga gaataatact gctgccactc 181 ggaattctga tttcccagtc tgggatgact ataaaagcag tgtagatgac ttacagtatt 241 ttctgattgg gctctataca tttgtaagtc ttcttggctt tatggggaat ctacttattt 301 taatggctct catgaaaaag cgtaatcaga agactacggt aaacttcctc ataggcaatc 361 tggccttttc tgatatcttg gttgtgctgt tttgctcacc tttcacactg acgtctgtct 421 tgctggatca gtggatgttt ggcaaagtca tgtgccatat tatgcctttt cttcaatgtg 481 tgtcagtttt ggtttcaact ttaattttaa tatcaattgc cattgtcagg tatcatatga 541 taaaacatcc catatctaat aatttaacag caaaccatgg ctactttctg atagctactg 601 tctggacact aggttttgcc atctgttctc cccttccagt gtttcacagt cttgtggaac 661 ttcaagaaac atttggttca gcattgctga gcagcaggta tttatgtgtt gagtcatggc 721 catctgattc atacagaatt gcctttacta tctctttatt gctagttcag tatattctgc 781 ccttagtttg tcttactgta agtcatacaa gtgtctgcag aagtataagc tgtggattgt 841 ccaacaaaga aaacagactt gaagaaaatg agatgatcaa cttaactctt catccatcca 901 aaaagagtgg gcctcaggtg aaactctctg gcagccataa atggagttat tcattcatca 961 aaaaacacag aagaagatat agcaagaaga cagcatgtgt gttacctgct ccagaaagac 1021 cttctcaaga gaaccactcc agaatacttc cagaaaactt tggctctgta agaagtcagc 1081 tctcttcatc cagtaagttc ataccagggg tccccacttg ctttGAGATA AAACCTGAAG 1141 AAAATTCAGA TGTTCATGAA TTGAGAGTAA AACGTTCTGT TACAAGAATA AAAAAGAGAT 1201 CTCGAAGTGT TTTCTACAGA CTGACCATAC TGATATTAGT ATTTGCTGTT AGTTGGATGC 1261 CACTACACCT TTTCCATGTG GTAACTGATT TTAATGACAA TCTTATTTCA AATAGGCATT 1321 TCAAGTTGGT GTATTGCATT TGTCATTTGT TGGGCATGAT GTCCTGTTGT CTTAATCCAA 1381 TTCTATATGG GTTTCTTAAT AATGGGATTA AAGCTGATTT AGTGTCCCTT ATACACTGTC 1441 TTCATATGTA GGACCCAGCT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 1501 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAAGTAT TTCGATTTCT TGGCTTTATA 1561 TATCTTGTGG AAAGGACGAT ATCTGAATGT GGGGGTCGCT CCCACGCGTT AAGTCgacaa 1621 tcaacctctg gattacaaaa tttgtgaaag att