Construct: ORF TRCN0000488102

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021994.1_s317c1
DNA Barcode:
TATCTGAATGTGGGGGTCGCTCCC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
NPY5R (4889)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488102
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4889 NPY5R neuropeptide Y receptor Y5 XM_011532015.2 97% 96.7% (many diffs)
2 human 4889 NPY5R neuropeptide Y receptor Y5 XM_017008255.1 97% 96.7% (many diffs)
3 human 4889 NPY5R neuropeptide Y receptor Y5 XM_017008256.1 97% 96.7% (many diffs)
4 human 4889 NPY5R neuropeptide Y receptor Y5 NM_001317091.1 96.6% 96.5% 0_1ins41;3_3delGinsTCGCC
5 human 4889 NPY5R neuropeptide Y receptor Y5 NM_001317092.1 96.6% 96.5% 0_1ins41;3_3delGinsTCGCC
6 human 4889 NPY5R neuropeptide Y receptor Y5 NM_006174.4 96.6% 96.5% 0_1ins41;3_3delGinsTCGCC
7 human 4889 NPY5R neuropeptide Y receptor Y5 XM_005263038.3 96.6% 96.5% 0_1ins41;3_3delGinsTCGCC
8 human 4889 NPY5R neuropeptide Y receptor Y5 XM_011532017.2 96.6% 96.5% 0_1ins41;3_3delGinsTCGCC
9 mouse 18168 Npy5r neuropeptide Y receptor Y5 NM_016708.3 78.4% 82.1% (many diffs)
10 mouse 18168 Npy5r neuropeptide Y receptor Y5 XM_006509598.3 78.4% 82.1% (many diffs)
11 mouse 18168 Npy5r neuropeptide Y receptor Y5 XM_006509599.3 78.4% 82.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1449
ORF length:
1380
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gaagacgatc atcgccctga gctacatctt ctgcctggta ttcgccgatt
121tagagctcga cgagtattat aacaagacac ttgccacaga gaataatact gctgccactc
181ggaattctga tttcccagtc tgggatgact ataaaagcag tgtagatgac ttacagtatt
241ttctgattgg gctctataca tttgtaagtc ttcttggctt tatggggaat ctacttattt
301taatggctct catgaaaaag cgtaatcaga agactacggt aaacttcctc ataggcaatc
361tggccttttc tgatatcttg gttgtgctgt tttgctcacc tttcacactg acgtctgtct
421tgctggatca gtggatgttt ggcaaagtca tgtgccatat tatgcctttt cttcaatgtg
481tgtcagtttt ggtttcaact ttaattttaa tatcaattgc cattgtcagg tatcatatga
541taaaacatcc catatctaat aatttaacag caaaccatgg ctactttctg atagctactg
601tctggacact aggttttgcc atctgttctc cccttccagt gtttcacagt cttgtggaac
661ttcaagaaac atttggttca gcattgctga gcagcaggta tttatgtgtt gagtcatggc
721catctgattc atacagaatt gcctttacta tctctttatt gctagttcag tatattctgc
781ccttagtttg tcttactgta agtcatacaa gtgtctgcag aagtataagc tgtggattgt
841ccaacaaaga aaacagactt gaagaaaatg agatgatcaa cttaactctt catccatcca
901aaaagagtgg gcctcaggtg aaactctctg gcagccataa atggagttat tcattcatca
961aaaaacacag aagaagatat agcaagaaga cagcatgtgt gttacctgct ccagaaagac
1021cttctcaaga gaaccactcc agaatacttc cagaaaactt tggctctgta agaagtcagc
1081tctcttcatc cagtaagttc ataccagggg tccccacttg ctttGAGATA AAACCTGAAG
1141AAAATTCAGA TGTTCATGAA TTGAGAGTAA AACGTTCTGT TACAAGAATA AAAAAGAGAT
1201CTCGAAGTGT TTTCTACAGA CTGACCATAC TGATATTAGT ATTTGCTGTT AGTTGGATGC
1261CACTACACCT TTTCCATGTG GTAACTGATT TTAATGACAA TCTTATTTCA AATAGGCATT
1321TCAAGTTGGT GTATTGCATT TGTCATTTGT TGGGCATGAT GTCCTGTTGT CTTAATCCAA
1381TTCTATATGG GTTTCTTAAT AATGGGATTA AAGCTGATTT AGTGTCCCTT ATACACTGTC
1441TTCATATGTA GGACCCAGCT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1501ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAAGTAT TTCGATTTCT TGGCTTTATA
1561TATCTTGTGG AAAGGACGAT ATCTGAATGT GGGGGTCGCT CCCACGCGTT AAGTCgacaa
1621tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.