Construct: ORF TRCN0000488243
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020834.1_s317c1
- DNA Barcode:
- AGGAGCCCTGGTGGGTTTCCGCCG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CCR10 (2826)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488243
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2826 | CCR10 | C-C motif chemokine recepto... | NM_016602.3 | 100% | 100% | |
| 2 | mouse | 12777 | Ccr10 | chemokine (C-C motif) recep... | NM_007721.4 | 85.2% | 88.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1158
- ORF length:
- 1086
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggggacg gaggccacag agcaggtttc ctggggccat tactctgggg 121 atgaagagga cgcatactcg gctgagccac tgccggagct ttgctacaag gccgatgtcc 181 aggccttcag ccgggccttc caacccagtg tctccctgac cgtggctgcg ctgggtctgg 241 ccggcaatgg cctggtcctg gccacccacc tggcagcccg acgcgcagcg cgctcgccca 301 cctctgccca cctgctccag ctggccctgg ccgacctctt gctggccctg actctgccct 361 tcgcggcagc aggggctctt cagggctgga gtctgggaag tgccacctgc cgcaccatct 421 ctggcctcta ctcggcctcc ttccacgccg gcttcctctt cctggcctgt atcagcgccg 481 accgctacgt ggccatcgcg cgagcgctcc cagccgggcc gcggccctcc actcccggcc 541 gcgcacactt ggtctccgtc atcgtgtggc tgctgtcact gctcctggcg ctgcctgcgc 601 tgctcttcag ccaggatggg cagcgggaag gccaacgacg ctgtcgcctc atcttccccg 661 agggcctcac gcagacggtg aagggggcga gcgccgtggc gcaggtggcc ctgggcttcg 721 cgctgccgct gggcgtcatg gtagcctgct acgcgcttct gggccgcacg ctgctggccg 781 ccagggggcc cgagcgccgg cgtgcgctgc gcgtcgtggt ggctctggtg gcggccTTCG 841 TGGTGCTGCA GCTGCCCTAC AGCCTCGCCC TGCTGCTGGA TACTGCCGAT CTACTGGCTG 901 CGCGCGAGCG GAGCTGCCCT GCCAGCAAAC GCAAGGATGT CGCACTGCTG GTGACCAGCG 961 GCTTGGCCCT CGCCCGCTGT GGCCTCAATC CCGTTCTCTA CGCCTTCCTG GGCCTGCGCT 1021 TCCGCCAGGA CCTGCGGAGG CTGCTACGGG GTGGGAGCTG CCCCTCAGGG CCTCAACCCC 1081 GCCGCGGCTG CCCCCGCCGG CCCCGCCTTT CTTCCTGCTC AGCTCCCACG GAGACCCACA 1141 GTCTCTCCTG GGACAACTAG GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 1201 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 1261 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAAGGA GCCCTGGTGG 1321 GTTTCCGCCG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt