Construct: ORF TRCN0000488260
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019422.1_s317c1
- DNA Barcode:
- CTTGCCTTCCACCGGTTGCGGGCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCR10 (2826)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488260
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2826 | CCR10 | C-C motif chemokine recepto... | NM_016602.3 | 99.9% | 99.7% | 1086_1087insG |
| 2 | mouse | 12777 | Ccr10 | chemokine (C-C motif) recep... | NM_007721.4 | 85.1% | 87.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 63
- ORF end:
- 1152
- ORF length:
- 1089
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagcca 61 ccatggggac ggaggccaca gagcaggttt cctggggcca ttactctggg gatgaagagg 121 acgcatactc ggctgagcca ctgccggagc tttgctacaa ggccgatgtc caggccttca 181 gccgggcctt ccaacccagt gtctccctga ccgtggctgc gctgggtctg gccggcaatg 241 gcctggtcct ggccacccac ctggcagccc gacgcgcagc gcgctcgccc acctctgccc 301 acctgctcca gctggccctg gccgacctct tgctggccct gactctgccc ttcgcggcag 361 caggggctct tcagggctgg agtctgggaa gtgccacctg ccgcaccatc tctggcctct 421 actcggcctc cttccacgcc ggcttcctct tcctggcctg tatcagcgcc gaccgctacg 481 tggccatcgc gcgagcgctc ccagccgggc cgcggccctc cactcccggc cgcgcacact 541 tggtctccgt catcgtgtgg ctgctgtcac tgctcctggc gctgcctgcg ctgctcttca 601 gccaggatgg gcagcgggaa ggccaacgac gctgtcgcct catcttcccc gagggcctca 661 cgcagacggt gaagggggcg agcgccgtgg cgcaggtggc cctgggcttc gcgctgccgc 721 tgggcgtcat ggtagcctgc tacgcgcttc tgggccgcac gctgctggcc gccagggggc 781 ccgagcgccg gcgtgcgctg cgcgtcgtgg tggctctggt ggcggccTTC GTGGTGCTGC 841 AGCTGCCCTA CAGCCTCGCC CTGCTGCTGG ATACTGCCGA TCTACTGGCT GCGCGCGAGC 901 GGAGCTGCCC TGCCAGCAAA CGCAAGGATG TCGCACTGCT GGTGACCAGC GGCTTGGCCC 961 TCGCCCGCTG TGGCCTCAAT CCCGTTCTCT ACGCCTTCCT GGGCCTGCGC TTCCGCCAGG 1021 ACCTGCGGAG GCTGCTACGG GGTGGGAGCT GCCCCTCAGG GCCTCAACCC CGCCGCGGCT 1081 GCCCCCGCCG GCCCCGCCTT TCTTCCTGCT CAGCTCCCAC GGAGACCCAC AGTCTCTCCT 1141 GGGACAACGA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1201 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1261 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACTTGCC TTCCACCGGT TGCGGGCAAC 1321 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt