Construct: ORF TRCN0000488447

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021927.1_s317c1
DNA Barcode:
TCATTGCCTCAAGCTTGCCTCAAC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
THRB (7068)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488447
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7068 THRB thyroid hormone receptor beta NM_000461.5 100% 100%
2 human 7068 THRB thyroid hormone receptor beta NM_001128176.3 100% 100%
3 human 7068 THRB thyroid hormone receptor beta NM_001128177.2 100% 100%
4 human 7068 THRB thyroid hormone receptor beta NM_001252634.2 100% 100%
5 human 7068 THRB thyroid hormone receptor beta NM_001354708.2 100% 100%
6 human 7068 THRB thyroid hormone receptor beta NM_001354709.2 100% 100%
7 human 7068 THRB thyroid hormone receptor beta NM_001354710.2 100% 100%
8 human 7068 THRB thyroid hormone receptor beta NM_001354711.2 100% 100%
9 human 7068 THRB thyroid hormone receptor beta NM_001354712.2 100% 100%
10 human 7068 THRB thyroid hormone receptor beta NM_001354713.2 100% 100%
11 human 7068 THRB thyroid hormone receptor beta XM_006713318.3 100% 100%
12 human 7068 THRB thyroid hormone receptor beta XM_011534047.3 100% 100%
13 human 7068 THRB thyroid hormone receptor beta XM_011534050.2 100% 100%
14 human 7068 THRB thyroid hormone receptor beta XM_011534052.2 100% 100%
15 human 7068 THRB thyroid hormone receptor beta XM_017007109.1 100% 100%
16 human 7068 THRB thyroid hormone receptor beta XM_017007111.1 100% 100%
17 human 7068 THRB thyroid hormone receptor beta XM_017007112.1 100% 100%
18 human 7068 THRB thyroid hormone receptor beta XM_024453733.1 100% 100%
19 human 7068 THRB thyroid hormone receptor beta XM_024453734.1 100% 100%
20 human 7068 THRB thyroid hormone receptor beta XM_024453735.1 100% 100%
21 human 7068 THRB thyroid hormone receptor beta XM_024453736.1 100% 100%
22 human 7068 THRB thyroid hormone receptor beta XM_024453737.1 100% 100%
23 human 7068 THRB thyroid hormone receptor beta XM_024453738.1 100% 100%
24 human 7068 THRB thyroid hormone receptor beta NM_001354714.2 93.2% 93.2% 0_1ins93
25 human 7068 THRB thyroid hormone receptor beta NM_001354715.2 93.2% 93.2% 0_1ins93
26 human 7068 THRB thyroid hormone receptor beta XM_011534053.2 93.2% 93.2% 0_1ins93
27 human 7068 THRB thyroid hormone receptor beta XM_017007113.1 93.2% 93.2% 0_1ins93
28 mouse 21834 Thrb thyroid hormone receptor beta NM_001113417.1 90.6% 96.5% (many diffs)
29 mouse 21834 Thrb thyroid hormone receptor beta XM_006517966.2 90.6% 96.5% (many diffs)
30 mouse 21834 Thrb thyroid hormone receptor beta XM_006517967.3 90.6% 96.5% (many diffs)
31 mouse 21834 Thrb thyroid hormone receptor beta XM_006517968.3 90.6% 96.5% (many diffs)
32 mouse 21834 Thrb thyroid hormone receptor beta XM_006517970.3 90.6% 96.5% (many diffs)
33 mouse 21834 Thrb thyroid hormone receptor beta XM_006517971.3 90.6% 96.5% (many diffs)
34 mouse 21834 Thrb thyroid hormone receptor beta XM_006517972.3 90.6% 96.5% (many diffs)
35 mouse 21834 Thrb thyroid hormone receptor beta XM_011244737.1 90.6% 96.5% (many diffs)
36 mouse 21834 Thrb thyroid hormone receptor beta XM_011244738.2 90.6% 96.5% (many diffs)
37 mouse 21834 Thrb thyroid hormone receptor beta XM_011244739.2 90.6% 96.5% (many diffs)
38 mouse 21834 Thrb thyroid hormone receptor beta XM_011244740.2 90.6% 96.5% (many diffs)
39 mouse 21834 Thrb thyroid hormone receptor beta XM_011244741.2 90.6% 96.5% (many diffs)
40 mouse 21834 Thrb thyroid hormone receptor beta XM_011244742.1 90.6% 96.5% (many diffs)
41 mouse 21834 Thrb thyroid hormone receptor beta XM_011244743.2 90.6% 96.5% (many diffs)
42 mouse 21834 Thrb thyroid hormone receptor beta XM_017315946.1 90.6% 96.5% (many diffs)
43 mouse 21834 Thrb thyroid hormone receptor beta XM_017315947.1 90.6% 96.5% (many diffs)
44 mouse 21834 Thrb thyroid hormone receptor beta XM_017315948.1 89.5% 95% (many diffs)
45 mouse 21834 Thrb thyroid hormone receptor beta XM_011244745.1 84.5% 91.1% (many diffs)
46 mouse 21834 Thrb thyroid hormone receptor beta NM_009380.3 79.5% 77.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1452
ORF length:
1383
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gactcccaac agtatgacag aaaatggcct tacagcctgg gacaaaccga
121agcactgtcc agaccgagaa cacgactgga agctagtagg aatgtctgaa gcctgcctac
181ataggaagag ccattcagag aggcgcagca cgttgaaaaa tgaacagtcg tcgccacatc
241tcatccagac cacttggact agctcaatat tccatctgga ccatgatgat gtgaacgacc
301agagtgtctc aagtgcccag accttccaaa cggaggagaa gaaatgtaaa gggtacatcc
361ccagttactt agacaaggac gagctctgtg tagtgtgtgg tgacaaagcc accgggtatc
421actaccgctg tatcacgtgt gaaggctgca agggtttctt tagaagaacc attcagaaaa
481atctccatcc atcctattcc tgtaaatatg aaggaaaatg tgtcatagac aaagtcacgc
541gaaatcagtg ccaggaatgt cgctttaaga aatgcatcta tgttggcatg gcaacagatt
601tggtgctgga tgacagcaag aggctggcca agaggaagct gatagaggag aaccgggaga
661aaagacggcg ggaagagctg cagaagtcca tcgggcacaa gccagagccc acagacgagg
721aatgggagct catcaaaact gtcaccgaag cccatgtggc gaccaacgcc caaggcagcc
781actggaagca aaaacggaaa ttcctgccag aagacattgg acaagcacca atagtcaatg
841ccccagaagg tggaaaggtt gacttggaag ccttcagcca ttttacaaaa atcatcacac
901cagcaattac cagagtggtg gattttgcca aaaagttgcc tatgttttgt gagctgccat
961gtgaagacca gatcatcctc ctcaaaggct gctgcatgga gatcatgtcc cttcgcgctg
1021ctgtgcgcta tgacccagaa agtgagactt taaccttgaa tggggaaatg gcagtgacac
1081ggggccagct gaaaaatggg ggtcttgggg tggtgtcaga cgccatcttt gacctgggca
1141tgtctctgtc ttctttcaac ctggatgaca ctgaagtagc cctccTTCAG GCCGTCCTGC
1201TGATGTCTTC AGATCGCCCG GGGCTTGCCT GTGTTGAGAG AATAGAAAAG TACCAAGATA
1261GTTTCCTGCT GGCCTTTGAA CACTATATCA ATTACCGAAA ACACCACGTG ACACACTTTT
1321GGCCAAAACT CCTGATGAAG GTGACAGATC TGCGGATGAT AGGAGCCTGC CATGCCAGCC
1381GCTTCCTGCA CATGAAGGTG GAATGCCCCA CAGAACTCTT CCCCCCTTTG TTCTTGGAAG
1441TGTTCGAGGA TTAGAACCCA GCTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1501CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1561TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TCATTGCCTC AAGCTTGCCT
1621CAACACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)