Construct: ORF TRCN0000488601
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021207.1_s317c1
- DNA Barcode:
- GCGCAGGACTACTCTTTGGCGTTC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- PTGER4 (5734)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488601
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | NM_000958.3 | 100% | 100% | |
| 2 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009658.1 | 64.2% | 57% | (many diffs) |
| 3 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009659.2 | 62.5% | 59.3% | (many diffs) |
| 4 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009656.2 | 61.5% | 55.7% | 867_958del;1050_1051ins506 |
| 5 | human | 5734 | PTGER4 | prostaglandin E receptor 4 | XM_017009657.1 | 60.4% | 58.2% | 867_924del;978_979ins544 |
| 6 | mouse | 19219 | Ptger4 | prostaglandin E receptor 4 ... | NM_001136079.2 | 85.7% | 87.7% | (many diffs) |
| 7 | mouse | 19219 | Ptger4 | prostaglandin E receptor 4 ... | NM_008965.2 | 81.6% | 83.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1536
- ORF length:
- 1464
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgtccact cccggggtca attcgtccgc ctccttgagc cccgaccggc 121 tgaacagccc agtgaccatc ccggcggtga tgttcatctt cggggtggtg ggcaacctgg 181 tggccatcgt ggtgctgtgc aagtcgcgca aggagcagaa ggagacgacc ttctacacgc 241 tggtatgtgg gctggctgtc accgacctgt tgggcacttt gttggtgagc ccggtgacca 301 tcgccacgta catgaagggc caatggcccg ggggccagcc gctgtgcgag tacagcacct 361 tcattctgct cttcttcagc ctgtccggcc tcagcatcat ctgcgccatg agtgtcgagc 421 gctacctggc catcaaccat gcctatttct acagccacta cgtggacaag cgattggcgg 481 gcctcacgct ctttgcagtc tatgcgtcca acgtgctctt ttgcgcgctg cccaacatgg 541 gtctcggtag ctcgcggctg cagtacccag acacctggtg cttcatcgac tggaccacca 601 acgtgacggc gcacgccgcc tactcctaca tgtacgcggg cttcagctcc ttcctcattc 661 tcgccaccgt cctctgcaac gtgcttgtgt gcggcgcgct gctccgcatg caccgccagt 721 tcatgcgccg cacctcgctg ggcaccgagc agcaccacgc ggccgcggcc gcctcggttg 781 cctcccgggg ccaccccgct gcctccccag ccttgccgcg cctcagcgac tttcggcgcc 841 gccggagctt ccgccgcatc gcgggcgccg agatccagat ggtcatctta ctcattgcca 901 cctccctggt ggtgctcatc tgctccatcc cgctcgtggt gcgagtattc gtcaaccagt 961 tatatcagcc aagtttggag cgagaagtca gtaaaaatcc agatttgcag gccatccgaa 1021 ttgcttctgt gaaccccatc ctagacccct ggatatatat cctcctgaga aagacagtgc 1081 tcagtaaagc aatagagaag atcaaatgcc tcttctgccg cattggcggg tcccgcaggg 1141 agcgctccgg acagcactgc tcagacagtc aaaggacatc ttctgccatg tcaggccact 1201 ctcgctcctt catctcccgg gagctgaagg agatcagcag tacatctcag acccTCCTGC 1261 CAGACCTCTC ACTGCCAGAC CTCAGTGAAA ATGGCCTTGG AGGCAGGAAT TTGCTTCCAG 1321 GTGTGCCTGG CATGGGCCTG GCCCAGGAAG ACACCACCTC ACTGAGGACT TTGCGAATAT 1381 CAGAGACCTC AGACTCTTCA CAGGGTCAGG ACTCAGAGAG TGTCTTACTG GTGGATGAGG 1441 CTGGTGGGAG CGGCAGGGCT GGGCCTGCCC CTAAGGGGAG CTCCCTGCAA GTCACATTTC 1501 CCAGTGAAAC ACTGAACTTA TCAGAAAAAT GTATATAGAA CCCAGCTTTC TTGTACAAAG 1561 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1621 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1681 ACGAGCGCAG GACTACTCTT TGGCGTTCAC GCGTTAAGTC gacaatcaac ctctggatta 1741 caaaatttgt gaaagatt