Construct: ORF TRCN0000488664

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021989.1_s317c1
DNA Barcode:
TATTCGTGAGCATATAGGTTTATT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
NPY2R (4887)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488664
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4887 NPY2R neuropeptide Y receptor Y2 NM_000910.4 99.3% 99.4% (many diffs)
2 human 4887 NPY2R neuropeptide Y receptor Y2 NM_001370180.1 99.3% 99.4% (many diffs)
3 human 4887 NPY2R neuropeptide Y receptor Y2 XM_005263033.4 99.3% 99.4% (many diffs)
4 mouse 18167 Npy2r neuropeptide Y receptor Y2 NM_008731.3 87.1% 93.7% (many diffs)
5 mouse 18167 Npy2r neuropeptide Y receptor Y2 XM_006501115.1 87.1% 93.7% (many diffs)
6 mouse 18167 Npy2r neuropeptide Y receptor Y2 XM_006501116.1 87.1% 93.7% (many diffs)
7 mouse 18167 Npy2r neuropeptide Y receptor Y2 NM_001205099.1 60.8% 65.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1212
ORF length:
1143
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gggtccaata ggtgcagagg ctgatgagaa ccagacagtg gaagaaatga
121aggtggaaca atacgggcca caaacaactc ctagaggtga actggtccct gaccctgagc
181cagagcttat agatagtacc aagctgattg aggtacaagt tgttctcata ttggcctact
241gctccatcat cttgcttggg gtaattggca actccttggt gatccatgtg gtgatcaaat
301tcaagagcat gcgcacagta accaactttt tcattgccaa tctggctgtg gcagatcttt
361tggtgaacac tctgtgtcta ccgttcactc ttacctatac cttaatggga gagtggaaaa
421tgggtcctgt cctgtgccac ctggtgccct atgcccaggg cctggcagta caagtatcca
481caatcacctt gacagtaatt gccctggacc ggcacaggtg catcgtctac cacctagaga
541gcaagatctc caagcgaatc agcttcctga ttattggctt ggcctggggc atcagtgccc
601tgctggcaag tcccctggcc atcttccggg agtattcgct gattgagatc attccggact
661ttgagattgt ggcctgtact gaaaagtggc ctggcgagga gaagagcatc tatggcactg
721tctatagtct ttcttccttg ttgatcttgt atgttttgcc tcttggcatt atatcatttt
781cctacactcg catttggagt aaattgaaga accatgtcag tcctggagct gcaaatgacc
841actaccatca gcgaaggcaa aaaaccacca aaatgctggt gtgtgtggtg gtggtgtttG
901CGGTCAGCTG GCTGCCTCTC CATGCCTTCC AGCTTGCCGT TGACATTGAC AGCCAGGTCC
961TGGACCTGAA GGAGTACAAA CTCATCTTCA CAGTGTTCCA CATTATCGCC ATGTGCTCCA
1021CTTTTGCCAA TCCCCTTCTC TATGGCTGGA TGAACAGCAA CTACAGAAAG GCTTTCCTCT
1081CGGCCTTCCG CTGTGAGCAG CGGTTGGATG CCATTCACTC TGAGGTGTCC GTGACATTCA
1141AGGCTAAAAA GAACCTGGAG GTCAGAAAGA ACAGTGCTCC CAATGACTCT TTCACAGAGG
1201GCACCAATGT CTAGGACCCA GCTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1261CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1321TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TATTCGTGAG CATATAGGTT
1381TATTACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)