Transcript: Human XM_005263033.4

PREDICTED: Homo sapiens neuropeptide Y receptor Y2 (NPY2R), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NPY2R (4887)
Length:
3461
CDS:
332..1477

Additional Resources:

NCBI RefSeq record:
XM_005263033.4
NBCI Gene record:
NPY2R (4887)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005263033.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000357664 GTAGGTTGCATTATGAGTAAA pLKO_005 1704 3UTR 100% 13.200 18.480 N NPY2R n/a
2 TRCN0000357592 ACCGTTCACTCTTACCTATAC pLKO_005 643 CDS 100% 10.800 15.120 N NPY2R n/a
3 TRCN0000009215 CCTGAGCCAGAGCTTATAGAT pLKO.1 437 CDS 100% 5.625 4.500 N NPY2R n/a
4 TRCN0000357665 GATCCATGTGGTGATCAAATT pLKO_005 544 CDS 100% 13.200 9.240 N NPY2R n/a
5 TRCN0000009214 CCTATCTGTAAGAGGTACTAA pLKO.1 2539 3UTR 100% 5.625 3.938 N NPY2R n/a
6 TRCN0000009217 CCTTGTTGATCTTGTATGTTT pLKO.1 999 CDS 100% 5.625 3.938 N NPY2R n/a
7 TRCN0000009216 CCTTCTCTATGGCTGGATGAA pLKO.1 1297 CDS 100% 4.950 3.465 N NPY2R n/a
8 TRCN0000011778 GCTGCAAATGACCACTACCAT pLKO.1 1091 CDS 100% 3.000 1.800 N NPY2R n/a
9 TRCN0000357590 ATTCGCTGATTGAGATCATTC pLKO_005 897 CDS 100% 10.800 7.560 N NPY2R n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005263033.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01109 pDONR223 100% 99.8% 100% None 585C>T;936C>T n/a
2 ccsbBroad304_01109 pLX_304 0% 99.8% 100% V5 585C>T;936C>T n/a
3 TRCN0000480898 TACTCTTTCATGAAAGGTCACTAT pLX_317 34.1% 99.8% 100% V5 585C>T;936C>T n/a
4 TRCN0000491953 ACACTCGCATTCTAACTTGCCGCG pLX_317 30.8% 99.8% 100% V5 (not translated due to prior stop codon) 585C>T;936C>T n/a
5 TRCN0000488664 TATTCGTGAGCATATAGGTTTATT pLX_317 27.8% 99.3% 99.4% V5 (not translated due to prior stop codon) (many diffs) n/a
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