Construct: ORF TRCN0000488980

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019113.1_s317c1
DNA Barcode:
CTCGTATACCCCACCTCATTGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTK7 (5754)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488980
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5754 PTK7 protein tyrosine kinase 7 (... NM_002821.5 99.9% 99.9% 1851G>A;3210_3211insG
2 human 5754 PTK7 protein tyrosine kinase 7 (... NM_001270398.1 96.8% 96.5% (many diffs)
3 human 5754 PTK7 protein tyrosine kinase 7 (... NM_152880.4 96.2% 96.1% 1497_1498ins120;1731G>A;3090_3091insG
4 human 5754 PTK7 protein tyrosine kinase 7 (... NM_152882.4 94.7% 94.6% 1851G>A;1878_1879ins168;3042_3043insG
5 human 5754 PTK7 protein tyrosine kinase 7 (... XM_011514765.2 93.2% 92.8% (many diffs)
6 human 5754 PTK7 protein tyrosine kinase 7 (... NM_152881.4 87.7% 87.6% 1228_1229ins390;1461G>A;2820_2821insG
7 human 5754 PTK7 protein tyrosine kinase 7 (... XM_011514766.2 84.9% 84.4% (many diffs)
8 human 5754 PTK7 protein tyrosine kinase 7 (... NR_072997.2 71.3% (many diffs)
9 human 5754 PTK7 protein tyrosine kinase 7 (... NR_072998.2 70.4% (many diffs)
10 human 5754 PTK7 protein tyrosine kinase 7 (... XR_926286.2 70.3% (many diffs)
11 mouse 71461 Ptk7 PTK7 protein tyrosine kinase 7 NM_175168.4 87.4% 91.7% (many diffs)
12 mouse 71461 Ptk7 PTK7 protein tyrosine kinase 7 XM_006524922.2 86.6% 90.2% (many diffs)
13 mouse 71461 Ptk7 PTK7 protein tyrosine kinase 7 XM_006524924.2 86.1% 90.6% (many diffs)
14 mouse 71461 Ptk7 PTK7 protein tyrosine kinase 7 XM_006524923.1 85.7% 89.3% (many diffs)
15 mouse 71461 Ptk7 PTK7 protein tyrosine kinase 7 XM_017317638.1 68.2% 71.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
3285
ORF length:
3213
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgggagct gcgcggggat ccccggccag accccgccgg ttgcctctgc
121tcagcgtcct gctgctgccg ctgctgggcg gtacccagac agccattgtc ttcatcaagc
181agccgtcctc ccaggatgca ctgcaggggc gccgggcgct gcttcgctgt gaggttgagg
241ctccgggccc ggtacatgtg tactggctgc tcgatggggc ccctgtccag gacacggagc
301ggcgtttcgc ccagggcagc agcctgagct ttgcagctgt ggaccggctg caggactctg
361gcaccttcca gtgtgtggct cgggatgatg tcactggaga agaagcccgc agtgccaacg
421cctccttcaa catcaaatgg attgaggcag gtcctgtggt cctgaagcat ccagcctcgg
481aagctgagat ccagccacag acccaggtca cacttcgttg ccacattgat gggcaccctc
541ggcccaccta ccaatggttc cgagatggga cccccctttc tgatggtcag agcaaccaca
601cagtcagcag caaggagcgg aacctgacgc tccggccagc tggtcctgag catagtgggc
661tgtattcctg ctgcgcccac agtgcttttg gccaggcttg cagcagccag aacttcacct
721tgagcattgc tgatgaaagc tttgccaggg tggtgctggc accccaggac gtggtagtag
781cgaggtatga ggaggccatg ttccattgcc agttctcagc ccagccaccc ccgagcctgc
841agtggctctt tgaggatgag actcccatca ctaaccgcag tcgcccccca cacctccgca
901gagccacagt gtttgccaac gggtctctgc tgctgaccca ggtccggcca cgcaatgcag
961ggatctaccg ctgcattggc caggggcaga ggggcccacc catcatcctg gaagccacac
1021ttcacctagc agagattgaa gacatgccgc tatttgagcc acgggtgttt acagctggca
1081gcgaggagcg tgtgacctgc cttcccccca agggtctgcc agagcccagc gtgtggtggg
1141agcacgcggg agtccggctg cccacccatg gcagggtcta ccagaagggc cacgagctgg
1201tgttggccaa tattgctgaa agtgatgctg gtgtctacac ctgccacgcg gccaacctgg
1261ctggtcagcg gagacaggat gtcaacatca ctgtggccac tgtgccctcc tggctgaaga
1321agccccaaga cagccagctg gaggagggca aacccggcta cttggattgc ctgacccagg
1381ccacaccaaa acctacagtt gtctggtaca gaaaccagat gctcatctca gaggactcac
1441ggttcgaggt cttcaagaat gggaccttgc gcatcaacag cgtggaggtg tatgatggga
1501catggtaccg ttgtatgagc agcaccccag ccggcagcat cgaggcgcaa gcccgtgtcc
1561aagtgctgga aaagctcaag ttcacaccac caccccagcc acagcagtgc atggagtttg
1621acaaggaggc cacggtgccc tgttcagcca caggccgaga gaagcccact attaagtggg
1681aacgggcaga tgggagcagc ctcccagagt gggtgacaga caacgctggg accctgcatt
1741ttgcccgggt gactcgagat gacgctggca actacacttg cattgcctcc aacgggccgc
1801agggccagat tcgtgcccat gtccagctca ctgtggcagt ttttatcacc ttcaaagtgg
1861aaccagagcg tacgactgtg taccagggcc acacagccct actgcagtgc gaggcccagg
1921gagaccccaa gccgctgatt cagtggaaag gcaaggaccg catcctggac cccaccaagc
1981tgggacccag gatgcacatc ttccagaatg gctccctggt gatccatgac gtggcccctg
2041aggactcagg ccgctacacc tgcattgcag gcaacagctg caacatcaag cacacggagg
2101cccccctcta tgtcgtggac aagcctgtgc cggaggagtc ggagggccct ggcagccctc
2161ccccctacaa gatgatccag accattgggt tgtcggtggg tgccgctgtg gcctacatca
2221ttgccgtgct gggcctcatg ttctactgca agaagcgctg caaagccaag cggctgcaga
2281agcagcccga gggcgaggag ccagagatgg aatgcctcaa cggtgggcct ttgcagaacg
2341ggcagccctc agcagagatc caagaagaag tggccttgac cagcttgggc tccggccccg
2401cggccaccaa caaacgccac agcacaagtg ataagatgca cttcccacgg tctagcctgc
2461agcccatcac cacgctgggg aagagtgagt ttggggaggt gttcctggca aaggctcagg
2521gcttggagga gggagtggca gagaccctgg tacttgtgaa gagcctgcag agcaaggatg
2581agcagcagca gctggacttc cggagggagt tggagatgtt tgggaagctg aaccacgcca
2641acgtggtgcg gctcctgggg ctgtgccggg aggctgagcc ccactacatg gtgctggaat
2701atgtggatct gggagacctc aagcagttcc tgaggatttc caagagcaag gatgaaaaat
2761tgaagtcaca gcccctcagc accaagcaga aggtggccct atgcacccag gtagccctgg
2821gcatggagca cctgtccaac aaccgctttg tgcataagga cttggctgcg cgtaactgcc
2881tggtcagtgc ccagagacaa gtgaaggtgt ctgccctggg cctcagcaag gatgtgtaca
2941acagtgagta ctaccacttc cgccaggcct gggtgccgct gcgctggatg tcccccgagg
3001ccatcctgga gggtgacttc tctaccaagt ctgatgtctg ggccTTCGGT GTGCTGATGT
3061GGGAAGTGTT TACACATGGA GAGATGCCCC ATGGTGGGCA GGCAGATGAT GAAGTACTGG
3121CAGATTTGCA GGCTGGGAAG GCTAGACTTC CTCAGCCCGA GGGCTGCCCT TCCAAACTCT
3181ATCGGCTGAT GCAGCGCTGC TGGGCCCTCA GCCCCAAGGA CCGGCCCTCC TTCAGTGAGA
3241TTGCCAGCGC CCTGGGAGAC AGCACCGTGG ACAGCAAGCC GGACCCAGCT TTCTTGTACA
3301AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
3361AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
3421AGGACGACTC GTATACCCCA CCTCATTGTG CACGCGTTAA GTCgacaatc aacctctgga
3481ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)

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