Construct: ORF TRCN0000489072
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020645.1_s317c1
- DNA Barcode:
- TATATCTAAAAGCAAGACTTGTCC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- ACVR1C (130399)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489072
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_145259.3 | 99.7% | 99.5% | (many diffs) |
| 2 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111031.1 | 89.6% | 89.4% | (many diffs) |
| 3 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111032.2 | 83.5% | 83.3% | (many diffs) |
| 4 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111033.2 | 67.9% | 67.9% | (many diffs) |
| 5 | mouse | 269275 | Acvr1c | activin A receptor, type IC | NM_001111030.1 | 85.8% | 92.4% | (many diffs) |
| 6 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_006498085.3 | 77.3% | 84.3% | (many diffs) |
| 7 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_011239108.2 | 77.3% | 84.3% | (many diffs) |
| 8 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_006498086.3 | 73% | 79.3% | (many diffs) |
| 9 | mouse | 269275 | Acvr1c | activin A receptor, type IC | NM_001033369.3 | 64.5% | 71.1% | (many diffs) |
| 10 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XR_374097.3 | 17.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1551
- ORF length:
- 1479
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgacccgg gcgctctgct cagcgctccg ccaggctctc ctgctgctcg 121 cagcggccgc cgagctctcg ccaggactga agtgtgtatg tcttttgtgt gattcttcaa 181 actttacctg ccaaacagaa ggagcatgtt gggcatcagt catgctaacc aatggaaaag 241 agcaggtgat caaatcctgt gtctcccttc cagaactgaa tgctcaagtc ttctgtcata 301 gttccaacaa tgttaccaaa accgaatgct gcttcacaga tttttgcaac aacataacac 361 tgcaccttcc aacagcatca ccaaatgccc caaaacttgg acccatggag ctggccatca 421 ttattactgt gcctgtttgc ctcctgtcca tagctgcgat gctgacagta tgggcatgcc 481 agggtcgaca gtgctcctac aggaagaaaa agagaccaaa tgtggaggaa ccactctctg 541 agtgcaatct ggtaaatgct ggaaaaactc tgaaagatct gatttatgat gtgaccgcct 601 ctggatctgg ctctggtcta cctctgttgg ttcaaaggac aattgcaagg acgattgtgc 661 ttcaggaaat agtaggaaaa ggtagatttg gtgaggtgtg gcatggaaga tggtgtgggg 721 aagatgtggc tgtgaaaata ttctcctcca gagatgaaag atattggttt cgtgaggcag 781 aaatttacca gacggtcatg ctgcgacatg aaaacatcct tggtttcatt gctgctgaca 841 acaaagataa tggaacttgg actcaacttt ggctggtatc tgaatatcat gaacagggct 901 ccttatatga ctatttgaat agaaatatag tgaccatggc tggaatgatc aagctggcgc 961 tctcaattgc tagtggtctg gcacaccttc atatggagat tgttggtaca caaggtaaac 1021 ctgctattgc tcatcgagac ataaaatcaa agaatatctt agtaaaaaag tgtgaaactt 1081 gtgccatagc ggacttaggg ttggctgtga agcatgattc aatactgaac actatcgaca 1141 tacctcagaa tcctaaagtg ggaaccaaga ggtatatggc tccTGAAATG CTTGATGATA 1201 CAATGAATGT GAATATCTTT GAGTCCTTCA AACGAGCTGA CATCTATTCT GTTGGTCTGG 1261 TTTACTGGGA AATAGCCCGG AGGTGTTCAG TCGGAGGAAT TGTTGAGGAG TACCAATTGC 1321 CTTATTATGA CATGGTGCCT TCAGATCCCT CGATAGAGGA AATGAGAAAG GTTGTTTGTG 1381 ACCAGAAGTT TCGACCAAGT ATCCCAAACC AGTGGCAAAG TTGTGAAGCA CTCCGAGTCA 1441 TGGGGAGAAT AATGCGTGAG TGTTGGTATG CCAACGGAGC GGCCCGCCTA ACTGCTCTTC 1501 GTATTAAGAA GACTATATCT CAACTTTGTG TCAAAGAAGA CTGCAAAGCC TAGAACCCAG 1561 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 1621 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 1681 TATCTTGTGG AAAGGACGAT ATATCTAAAA GCAAGACTTG TCCACGCGTT AAGTCgacaa 1741 tcaacctctg gattacaaaa tttgtgaaag att