Construct: ORF TRCN0000489349
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021856.1_s317c1
- DNA Barcode:
- AACCCATTCCGCTCGGCCTCAACG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- MLLT11 (10962)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489349
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10962 | MLLT11 | MLLT11 transcription factor... | NM_006818.4 | 100% | 100% | |
| 2 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | NM_019914.4 | 87.9% | 85.7% | (many diffs) |
| 3 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_006501800.3 | 87.9% | 85.7% | (many diffs) |
| 4 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319669.1 | 87.9% | 85.7% | (many diffs) |
| 5 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319670.1 | 87.9% | 85.7% | (many diffs) |
| 6 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319671.1 | 87.9% | 85.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 363
- ORF length:
- 270
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGCAGGCA CCATGAGGGA CCCTGTGAGT AGCCAGTACA 121 GTTCCTTTCT TTTCTGGAGG ATGCCCATCC CAGAACTGGA TCTGTCGGAG CTGGAAGGCC 181 TGGGTCTGTC AGATACAGCC ACCTACAAGG TCAAAGACAG CAGCGTTGGC AAAATGATCG 241 GGCAAGCAAC TGCAGCAGAC CAGGAGAAAA ACCCTGAAGG TGATGGCCTC CTTGAGTACA 301 GCACCTTCAA CTTCTGGAGA GCTCCCATTG CCAGCATCCA CTCCTTCGAA CTGGACTTGC 361 TCTAGAACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 421 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 481 CTTGGCTTTA TATATCTTGT GGAAAGGACG AAACCCATTC CGCTCGGCCT CAACGACGCG 541 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt