Construct: ORF TRCN0000489435

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020879.1_s317c1
DNA Barcode:
GCGGTCTGTCCATCACTCAGCATT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
NPY5R (4889)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489435
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4889 NPY5R neuropeptide Y receptor Y5 NM_001317091.1 100% 100%
2 human 4889 NPY5R neuropeptide Y receptor Y5 NM_001317092.1 100% 100%
3 human 4889 NPY5R neuropeptide Y receptor Y5 NM_006174.4 100% 100%
4 human 4889 NPY5R neuropeptide Y receptor Y5 XM_005263038.3 100% 100%
5 human 4889 NPY5R neuropeptide Y receptor Y5 XM_011532017.2 100% 100%
6 human 4889 NPY5R neuropeptide Y receptor Y5 XM_011532015.2 98.4% 98.4% 1_21del
7 human 4889 NPY5R neuropeptide Y receptor Y5 XM_017008255.1 98.4% 98.4% 1_21del
8 human 4889 NPY5R neuropeptide Y receptor Y5 XM_017008256.1 98.4% 98.4% 1_21del
9 mouse 18168 Npy5r neuropeptide Y receptor Y5 NM_016708.3 81.4% 85% (many diffs)
10 mouse 18168 Npy5r neuropeptide Y receptor Y5 XM_006509598.3 81.4% 85% (many diffs)
11 mouse 18168 Npy5r neuropeptide Y receptor Y5 XM_006509599.3 81.4% 85% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1407
ORF length:
1335
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggattta gagctcgacg agtattataa caagacactt gccacagaga
121ataatactgc tgccactcgg aattctgatt tcccagtctg ggatgactat aaaagcagtg
181tagatgactt acagtatttt ctgattgggc tctatacatt tgtaagtctt cttggcttta
241tggggaatct acttatttta atggctctca tgaaaaagcg taatcagaag actacggtaa
301acttcctcat aggcaatctg gccttttctg atatcttggt tgtgctgttt tgctcacctt
361tcacactgac gtctgtcttg ctggatcagt ggatgtttgg caaagtcatg tgccatatta
421tgccttttct tcaatgtgtg tcagttttgg tttcaacttt aattttaata tcaattgcca
481ttgtcaggta tcatatgata aaacatccca tatctaataa tttaacagca aaccatggct
541actttctgat agctactgtc tggacactag gttttgccat ctgttctccc cttccagtgt
601ttcacagtct tgtggaactt caagaaacat ttggttcagc attgctgagc agcaggtatt
661tatgtgttga gtcatggcca tctgattcat acagaattgc ctttactatc tctttattgc
721tagttcagta tattctgccc ttagtttgtc ttactgtaag tcatacaagt gtctgcagaa
781gtataagctg tggattgtcc aacaaagaaa acagacttga agaaaatgag atgatcaact
841taactcttca tccatccaaa aagagtgggc ctcaggtgaa actctctggc agccataaat
901ggagttattc attcatcaaa aaacacagaa gaagatatag caagaagaca gcatgtgtgt
961tacctgctcc agaaagacct tctcaagaga accactccag aatacttcca gaaaactttg
1021gctctgtaag aagtcagctc tcttcatcca gtaagttcat accaggggtc ccCACTTGCT
1081TTGAGATAAA ACCTGAAGAA AATTCAGATG TTCATGAATT GAGAGTAAAA CGTTCTGTTA
1141CAAGAATAAA AAAGAGATCT CGAAGTGTTT TCTACAGACT GACCATACTG ATATTAGTAT
1201TTGCTGTTAG TTGGATGCCA CTACACCTTT TCCATGTGGT AACTGATTTT AATGACAATC
1261TTATTTCAAA TAGGCATTTC AAGTTGGTGT ATTGCATTTG TCATTTGTTG GGCATGATGT
1321CCTGTTGTCT TAATCCAATT CTATATGGGT TTCTTAATAA TGGGATTAAA GCTGATTTAG
1381TGTCCCTTAT ACACTGTCTT CATATGTAGG ACCCAGCTTT CTTGTACAAA GTGGTTGATA
1441TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1501CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGCGGT
1561CTGTCCATCA CTCAGCATTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1621tgaaagatt

Download FASTA (ORF) (Full)

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