Construct: ORF TRCN0000489462

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021082.1_s317c1
DNA Barcode:
ATATGCCCAGCCTCCCGTTAATTA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
SSTR3 (6753)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489462
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6753 SSTR3 somatostatin receptor 3 NM_001051.5 99.6% 100% (many diffs)
2 human 6753 SSTR3 somatostatin receptor 3 NM_001278687.2 99.6% 100% (many diffs)
3 human 6753 SSTR3 somatostatin receptor 3 XM_005261721.4 99.6% 100% (many diffs)
4 human 6753 SSTR3 somatostatin receptor 3 XM_006724311.3 99.6% 100% (many diffs)
5 human 6753 SSTR3 somatostatin receptor 3 XM_011530349.2 99.6% 100% (many diffs)
6 human 6753 SSTR3 somatostatin receptor 3 XM_017028923.1 99.6% 100% (many diffs)
7 human 6753 SSTR3 somatostatin receptor 3 XM_017028924.1 99.6% 100% (many diffs)
8 mouse 20607 Sstr3 somatostatin receptor 3 NM_009218.3 82.2% 83.2% (many diffs)
9 mouse 20607 Sstr3 somatostatin receptor 3 XM_006520669.3 82.2% 83.2% (many diffs)
10 mouse 20607 Sstr3 somatostatin receptor 3 XM_006520670.3 82.2% 83.2% (many diffs)
11 mouse 20607 Sstr3 somatostatin receptor 3 XM_011245531.1 82.2% 83.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1326
ORF length:
1254
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggacatg cttcatccat catcggtgtc cacgacctca gaacctgaga
121atgcctcctc ggcctggccc ccagatgcca ccctgggcaa cgtgtcggca ggcccaagcc
181cggcagggct ggccgtcagt ggcgttctga tccccctggt ctacctggtg gtgtgcgtgg
241tgggcctgct gggtaactcg ctggtcatct atgtggtcct gcggcacacg gccagccctt
301cagtcaccaa cgtctacatc ctcaacctgg cgctggccga cgagctcttc atgctggggc
361tgcccttcct ggccgcccag aacgccctgt cctactggcc cttcggctcc ctcatgtgcc
421gcctggtcat ggcggtggat ggcatcaacc agttcaccag catattctgc ctgactgtca
481tgagcgtgga ccgctacctg gccgtggtac atcccacccg ctcagcccgc tggcgcacag
541ctccggtggc ccgcacggtc agcgcggctg tgtgggtggc ctcagccgtg gtggtgctgc
601ccgtggtggt cttctcggga gtgccccgcg gcatgagcac ctgccacatg cagtggcccg
661agccggcggc ggcctggcga gccggcttca tcatctacac ggccgcactg ggcttcttcg
721ggccgctgct ggtcatctgc ctctgctacc tgctcatcgt ggtgaaggtg cgctcagctg
781ggcgccgggt gtgggcaccc tcgtgccagc ggcggcggcg ctccgaacgc agggtcacgc
841gcatggtggt ggccgtggtg gcactcttcg tgctctgctg gatgcccttc tatgtgctca
901acatcgtcaa cgtggtgtgc ccactgcccg aggagcctgc cttctttggg ctctacttcc
961tggtggtggc gctgccctat gccaacagct gtgccaaccc catcctttat ggcttcctct
1021cctaccgctt caagcagggc ttccgcaggg tccTGCTGCG GCCCTCCCGC CGTGTGCGCA
1081GCCAGGAGCC CACTGTGGGG CCCCCGGAGA AGACTGAGGA GGAGGATGAG GAGGAGGAGG
1141ATGGGGAGGA GAGCAGGGAG GGGGGCAAGG GGAAGGAGAT GAACGGCCGG GTCAGCCAGA
1201TCACGCAGCC TGGCACCAGC GGGCAGGAGC GGCCGCCCAG CAGAGTGGCC AGCAAGGAGC
1261AGCAGCTCCT ACCCCAAGAG GCTTCCACTG GGGAGAAGTC CAGCACGATG CGCATCAGCT
1321ACCTGTAGGA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1381CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1441TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAATATGC CCAGCCTCCC GTTAATTAAC
1501GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)