Construct: ORF TRCN0000489509
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF022000.1_s317c1
- DNA Barcode:
- GACCACATAGTGCCGTTTCGGAGA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- NPY5R (4889)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489509
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_011532015.2 | 87.6% | 98.4% | 0_1ins186;3G>T;9_9delCinsAAG |
| 2 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_017008255.1 | 87.6% | 98.4% | 0_1ins186;3G>T;9_9delCinsAAG |
| 3 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_017008256.1 | 87.6% | 98.4% | 0_1ins186;3G>T;9_9delCinsAAG |
| 4 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | NM_001317091.1 | 86.4% | 100% | 0_1ins209 |
| 5 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | NM_001317092.1 | 86.4% | 100% | 0_1ins209 |
| 6 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | NM_006174.4 | 86.4% | 100% | 0_1ins209 |
| 7 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_005263038.3 | 86.4% | 100% | 0_1ins209 |
| 8 | human | 4889 | NPY5R | neuropeptide Y receptor Y5 | XM_011532017.2 | 86.4% | 100% | 0_1ins209 |
| 9 | mouse | 18168 | Npy5r | neuropeptide Y receptor Y5 | NM_016708.3 | 70.8% | 85% | (many diffs) |
| 10 | mouse | 18168 | Npy5r | neuropeptide Y receptor Y5 | XM_006509598.3 | 70.8% | 85% | (many diffs) |
| 11 | mouse | 18168 | Npy5r | neuropeptide Y receptor Y5 | XM_006509599.3 | 70.8% | 85% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 276
- ORF end:
- 1611
- ORF length:
- 1335
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccag gggttcgaat tccccaccgc cgcctccagg tcctgctccc gctgctgccg 121 ccaccgccgg ggtgcaggag cgatcgcgcc ccgaggtctg ctcattgtgt ttttcaggaa 181 aaaggaaggg aaagggtgtt acaaggaaag gctatcggta acaactgacc tgccacaaag 241 ttagaagaaa ggattgattc aagaaagact ataatatgga tttagagctc gacgagtatt 301 ataacaagac acttgccaca gagaataata ctgctgccac tcggaattct gatttcccag 361 tctgggatga ctataaaagc agtgtagatg acttacagta ttttctgatt gggctctata 421 catttgtaag tcttcttggc tttatgggga atctacttat tttaatggct ctcatgaaaa 481 agcgtaatca gaagactacg gtaaacttcc tcataggcaa tctggccttt tctgatatct 541 tggttgtgct gttttgctca cctttcacac tgacgtctgt cttgctggat cagtggatgt 601 ttggcaaagt catgtgccat attatgcctt ttcttcaatg tgtgtcagtt ttggtttcaa 661 ctttaatttt aatatcaatt gccattgtca ggtatcatat gataaaacat cccatatcta 721 ataatttaac agcaaaccat ggctactttc tgatagctac tgtctggaca ctaggttttg 781 ccatctgttc tccccttcca gtgtttcaca gtcttgtgga acttcaagaa acatttggtt 841 cagcattgct gagcagcagg tatttatgtg ttgagtcatg gccatctgat tcatacagaa 901 ttgcctttac tatctcttta ttgctagttc agtatattct gcccttagtt tgtcttactg 961 taagtcatac aagtgtctgc agaagtataa gctgtggatt gtccaacaaa gaaaacagac 1021 ttgaagaaaa tgagatgatc aacttaactc ttcatccatc caaaaagagt gggcctcagg 1081 tgaaactctc tggcagccat aaatggagtt attcattcat caaaaaacac agaagaagat 1141 atagcaagaa gacagcatgt gtgttacctg ctccagaaag accttctcaa gagaaccact 1201 ccagaatact tccagaaaac tttGGCTCTG TAAGAAGTCA GCTCTCTTCA TCCAGTAAGT 1261 TCATACCAGG GGTCCCCACT TGCTTTGAGA TAAAACCTGA AGAAAATTCA GATGTTCATG 1321 AATTGAGAGT AAAACGTTCT GTTACAAGAA TAAAAAAGAG ATCTCGAAGT GTTTTCTACA 1381 GACTGACCAT ACTGATATTA GTATTTGCTG TTAGTTGGAT GCCACTACAC CTTTTCCATG 1441 TGGTAACTGA TTTTAATGAC AATCTTATTT CAAATAGGCA TTTCAAGTTG GTGTATTGCA 1501 TTTGTCATTT GTTGGGCATG ATGTCCTGTT GTCTTAATCC AATTCTATAT GGGTTTCTTA 1561 ATAATGGGAT TAAAGCTGAT TTAGTGTCCC TTATACACTG TCTTCATATG TAGGACCCAG 1621 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 1681 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 1741 TATCTTGTGG AAAGGACGAG ACCACATAGT GCCGTTTCGG AGAACGCGTT AAGTCgacaa 1801 tcaacctctg gattacaaaa tttgtgaaag att