Construct: ORF TRCN0000489692

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020021.1_s317c1
DNA Barcode:
TGCTGGAACGATACCCATGTTATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSNK1E (1454)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489692
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 102800317 TPTEP2-CSNK1E TPTEP2-CSNK1E readthrough NM_001289912.2 99.9% 99.7% 1248_1249insG
2 human 1454 CSNK1E casein kinase 1 epsilon NM_001894.4 99.9% 99.7% 1248_1249insG
3 human 1454 CSNK1E casein kinase 1 epsilon NM_152221.3 99.9% 99.7% 1248_1249insG
4 human 1453 CSNK1D casein kinase 1 delta NM_139062.4 77.9% 84.1% (many diffs)
5 human 1453 CSNK1D casein kinase 1 delta NM_001363749.2 74.1% 78.6% (many diffs)
6 human 1453 CSNK1D casein kinase 1 delta XM_005256336.4 70.5% 74.5% (many diffs)
7 mouse 27373 Csnk1e casein kinase 1, epsilon NM_001289898.1 90.6% 98.5% (many diffs)
8 mouse 27373 Csnk1e casein kinase 1, epsilon NM_013767.6 90.6% 98.5% (many diffs)
9 mouse 27373 Csnk1e casein kinase 1, epsilon XM_017316657.1 90.6% 98.5% (many diffs)
10 mouse 27373 Csnk1e casein kinase 1, epsilon XM_017316658.1 90.6% 98.5% (many diffs)
11 mouse 27373 Csnk1e casein kinase 1, epsilon XM_017316659.1 90.6% 98.5% (many diffs)
12 mouse 27373 Csnk1e casein kinase 1, epsilon XM_006521043.3 85.3% 67.9% (many diffs)
13 mouse 27373 Csnk1e casein kinase 1, epsilon XM_011245649.1 85.3% 67.9% (many diffs)
14 mouse 27373 Csnk1e casein kinase 1, epsilon XM_011245650.2 85.3% 67.9% (many diffs)
15 mouse 27373 Csnk1e casein kinase 1, epsilon XM_011245651.1 85.3% 67.9% (many diffs)
16 mouse 27373 Csnk1e casein kinase 1, epsilon XM_011245652.2 85.3% 67.9% (many diffs)
17 mouse 27373 Csnk1e casein kinase 1, epsilon XM_011245653.2 85.3% 67.9% (many diffs)
18 mouse 27373 Csnk1e casein kinase 1, epsilon XM_011245654.2 85.3% 67.9% (many diffs)
19 mouse 27373 Csnk1e casein kinase 1, epsilon NM_001289899.1 75.4% 73.1% (many diffs)
20 mouse 27373 Csnk1e casein kinase 1, epsilon XM_017316660.1 75.4% 73.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1320
ORF length:
1251
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat ggagctacgt gtggggaaca agtaccgcct gggacggaag atcgggagcg
121ggtccttcgg agatatctac ctgggtgcca acatcgcctc tggtgaggaa gtcgccatca
181agctggagtg tgtgaagaca aagcaccccc agctgcacat cgagagcaag ttctacaaga
241tgatgcaggg tggcgtgggg atcccgtcca tcaagtggtg cggagctgag ggcgactaca
301acgtgatggt catggagctg ctggggccta gcctcgagga cctgttcaac ttctgttccc
361gcaaattcag cctcaagacg gtgctgctct tggccgacca gatgatcagc cgcatcgagt
421atatccactc caagaacttc atccaccggg acgtcaagcc cgacaacttc ctcatggggc
481tggggaagaa gggcaacctg gtctacatca tcgacttcgg cctggccaag aagtaccggg
541acgcccgcac ccaccagcac attccctacc gggaaaacaa gaacctgacc ggcacggccc
601gctacgcttc catcaacacg cacctgggca ttgagcaaag ccgtcgagat gacctggaga
661gcctgggcta cgtgctcatg tacttcaacc tgggctccct gccctggcag gggctcaaag
721cagccaccaa gcgccagaag tatgaacgga tcagcgagaa gaagatgtca acgcccatcg
781aggtcctctg caaaggctat ccctccgaat tctcaacata cctcaacttc tgccgctccc
841tgcggtttga cgacaagccc gactactctt acctacgtca gctcttccgc aacctcttcc
901accggcaggg cttctcctat GACTACGTCT TTGACTGGAA CATGCTGAAA TTCGGTGCAG
961CCCGGAATCC CGAGGATGTG GACCGGGAGC GGCGAGAACA CGAACGCGAG GAGAGGATGG
1021GGCAGCTACG GGGGTCCGCG ACCCGAGCCC TGCCCCCTGG CCCACCCACG GGGGCCACTG
1081CCAACCGGCT CCGCAGTGCC GCCGAGCCCG TGGCTTCCAC GCCAGCCTCC CGCATCCAGC
1141CGGCTGGCAA TACTTCTCCC AGAGCGATCT CGCGGGTCGA CCGGGAGAGG AAGGTGAGTA
1201TGAGGCTGCA CAGGGGTGCG CCCGCCAACG TCTCCTCCTC AGACCTCACT GGGCGGCAAG
1261AGGTCTCCCG GATCCCAGCC TCACAGACAA GTGTGCCATT TGACCATCTC GGGAAGGACC
1321CAGCTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1381TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1441ATATATCTTG TGGAAAGGAC GATGCTGGAA CGATACCCAT GTTATCACGC GTTAAGTCga
1501caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)

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