Transcript: Mouse XM_011245651.1

PREDICTED: Mus musculus casein kinase 1, epsilon (Csnk1e), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Csnk1e (27373)
Length:
2779
CDS:
103..1398

Additional Resources:

NCBI RefSeq record:
XM_011245651.1
NBCI Gene record:
Csnk1e (27373)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011245651.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000023806 CGAGTACATACACTCCAAGAA pLKO.1 450 CDS 100% 4.950 6.930 N Csnk1e n/a
2 TRCN0000319704 CGAGTACATACACTCCAAGAA pLKO_005 450 CDS 100% 4.950 6.930 N Csnk1e n/a
3 TRCN0000023805 CGAGTTCTCAACATACCTCAA pLKO.1 840 CDS 100% 4.050 5.670 N Csnk1e n/a
4 TRCN0000319767 CGAGTTCTCAACATACCTCAA pLKO_005 840 CDS 100% 4.050 5.670 N Csnk1e n/a
5 TRCN0000023804 CGCATCCAACAAACTGGCAAT pLKO.1 1226 CDS 100% 4.050 5.670 N Csnk1e n/a
6 TRCN0000350184 CGCATCCAACAAACTGGCAAT pLKO_005 1226 CDS 100% 4.050 5.670 N Csnk1e n/a
7 TRCN0000000602 CCAGTGTTTGCTTAGTGTCTT pLKO.1 1431 3UTR 100% 4.950 3.465 N CSNK1E n/a
8 TRCN0000220096 CCAGTGTTTGCTTAGTGTCTT pLKO.1 1431 3UTR 100% 4.950 3.465 N CSNK1E n/a
9 TRCN0000023808 GCCCGCACACACCAGCATATT pLKO.1 577 CDS 100% 4.400 3.080 N Csnk1e n/a
10 TRCN0000319766 GCCCGCACACACCAGCATATT pLKO_005 577 CDS 100% 4.400 3.080 N Csnk1e n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011245651.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroad304_00379 pLX_304 2% 85.4% 70.6% V5 (sequence mutation detected) (many diffs) n/a
2 ccsbBroadEn_00379 pDONR223 100% 85.4% 67.9% None (many diffs) n/a
3 TRCN0000481162 AGAGCTCGCCGCCCTTAACAATCT pLX_317 35.8% 85.4% 67.9% V5 (many diffs) n/a
4 ccsbBroadEn_14601 pDONR223 0% 85.4% 67.9% None (many diffs) n/a
5 ccsbBroad304_14601 pLX_304 49.7% 85.4% 67.9% V5 (many diffs) n/a
6 TRCN0000481381 TTTCCAAGGCATTCTACCCATATC pLX_317 32.5% 85.4% 67.9% V5 (many diffs) n/a
7 TRCN0000489403 GCAGAGAGGTCTATAAGGTCAGGT pLX_317 32.1% 85.4% 67.9% V5 (not translated due to prior stop codon) (many diffs) n/a
8 TRCN0000489692 TGCTGGAACGATACCCATGTTATC pLX_317 32% 85.3% 67.9% V5 (many diffs) n/a
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