Construct: ORF TRCN0000489757
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020662.1_s317c1
- DNA Barcode:
- CTCCGATCCCGCGCCATTGGAACA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- BMPR1A (657)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489757
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 657 | BMPR1A | bone morphogenetic protein ... | NM_004329.2 | 100% | 100% | |
| 2 | human | 657 | BMPR1A | bone morphogenetic protein ... | XM_011540103.2 | 100% | 100% | |
| 3 | human | 657 | BMPR1A | bone morphogenetic protein ... | XM_011540104.2 | 100% | 100% | |
| 4 | mouse | 12166 | Bmpr1a | bone morphogenetic protein ... | NM_009758.4 | 90.9% | 97.9% | (many diffs) |
| 5 | mouse | 12166 | Bmpr1a | bone morphogenetic protein ... | XM_006518469.4 | 90.9% | 97.9% | (many diffs) |
| 6 | mouse | 12166 | Bmpr1a | bone morphogenetic protein ... | XM_006518470.4 | 90.9% | 97.9% | (many diffs) |
| 7 | mouse | 12166 | Bmpr1a | bone morphogenetic protein ... | XM_017315806.2 | 90.9% | 97.9% | (many diffs) |
| 8 | mouse | 12166 | Bmpr1a | bone morphogenetic protein ... | XM_030247615.1 | 90.9% | 97.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1668
- ORF length:
- 1596
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgcctcag ctatacattt acatcagatt attgggagcc tatttgttca 121 tcatttctcg tgttcaagga cagaatctgg atagtatgct tcatggcact gggatgaaat 181 cagactccga ccagaaaaag tcagaaaatg gagtaacctt agcaccagag gataccttgc 241 cttttttaaa gtgctattgc tcagggcact gtccagatga tgctattaat aacacatgca 301 taactaatgg acattgcttt gccatcatag aagaagatga ccagggagaa accacattag 361 cttcagggtg tatgaaatat gaaggatctg attttcagtg caaagattct ccaaaagccc 421 agctacgccg gacaatagaa tgttgtcgga ccaatttatg taaccagtat ttgcaaccca 481 cactgccccc tgttgtcata ggtccgtttt ttgatggcag cattcgatgg ctggttttgc 541 tcatttctat ggctgtctgc ataattgcta tgatcatctt ctccagctgc ttttgttaca 601 aacattattg caagagcatc tcaagcagac gtcgttacaa tcgtgatttg gaacaggatg 661 aagcatttat tccagttgga gaatcactaa aagaccttat tgaccagtca caaagttctg 721 gtagtgggtc tggactacct ttattggttc agcgaactat tgccaaacag attcagatgg 781 tccggcaagt tggtaaaggc cgatatggag aagtatggat gggcaaatgg cgtggcgaaa 841 aagtggcggt gaaagtattc tttaccactg aagaagccag ctggtttcga gaaacagaaa 901 tctaccaaac tgtgctaatg cgccatgaaa acatacttgg tttcatagcg gcagacatta 961 aaggtacagg ttcctggact cagctctatt tgattactga ttaccatgaa aatggatctc 1021 tctatgactt cctgaaatgt gctacactgg acaccagagc cctgcttaaa ttggcttatt 1081 cagctgcctg tggtctgtgc cacctgcaca cagaaattta tggcacccaa ggaaagcccg 1141 caattgctca tcgagaccta aagagcaaaa acatcctcat caagaaaaat gggagttgct 1201 gcattgctga cctgggcctt gctgttaaat tcaacagtga cacaaatgaa gttgatgtgc 1261 ccttgaatac cagggtgggc accaaacgct acatggctcc cGAAGTGCTG GACGAAAGCC 1321 TGAACAAAAA CCACTTCCAG CCCTACATCA TGGCTGACAT CTACAGCTTC GGCCTAATCA 1381 TTTGGGAGAT GGCTCGTCGT TGTATCACAG GAGGGATCGT GGAAGAATAC CAATTGCCAT 1441 ATTACAACAT GGTACCGAGT GATCCGTCAT ACGAAGATAT GCGTGAGGTT GTGTGTGTCA 1501 AACGTTTGCG GCCAATTGTG TCTAATCGGT GGAACAGTGA TGAATGTCTA CGAGCAGTTT 1561 TGAAGCTAAT GTCAGAATGC TGGGCCCACA ATCCAGCCTC CAGACTCACA GCATTGAGAA 1621 TTAAGAAGAC GCTTGCCAAG ATGGTTGAAT CCCAAGATGT AAAAATCTAG AACCCAGCTT 1681 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1741 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1801 CTTGTGGAAA GGACGACTCC GATCCCGCGC CATTGGAACA ACGCGTTAAG TCgacaatca 1861 acctctggat tacaaaattt gtgaaagatt