Construct: ORF TRCN0000489769

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019358.1_s317c1
DNA Barcode:
AATTTGATTGTTCTTGGCAAGCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CXCR5 (643)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489769
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 643 CXCR5 C-X-C motif chemokine recep... NM_032966.2 99.7% 99.6% 879G>C;981_982insG
2 human 643 CXCR5 C-X-C motif chemokine recep... NM_001716.5 87.7% 87.6% 1_135del;1014G>C;1116_1117insG
3 mouse 12145 Cxcr5 chemokine (C-X-C motif) rec... NM_007551.2 73.4% 77.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
1059
ORF length:
984
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggcc tccttcaagg ccgtgttcgt gcccgtggcc tacagcctca
121tcttcctcct gggcgtgatc ggcaacgtcc tggtgctggt gatcctggag cggcaccggc
181agacacgcag ttccacggag accttcctgt tccacctggc cgtggccgac ctcctgctgg
241tcttcatctt gccctttgcc gtggccgagg gctctgtggg ctgggtcctg gggaccttcc
301tctgcaaaac tgtgattgcc ctgcacaaag tcaacttcta ctgcagcagc ctgctcctgg
361cctgcatcgc cgtggaccgc tacctggcca ttgtccacgc cgtccatgcc taccgccacc
421gccgcctcct ctccatccac atcacctgtg ggaccatctg gctggtgggc ttcctccttg
481ccttgccaga gattctcttc gccaaagtca gccaaggcca tcacaacaac tccctgccac
541gttgcacctt ctcccaagag aaccaagcag aaacgcatgc ctggttcacc tcccgattcc
601tctaccatgt ggcgggattc ctgctgccca tgctggtgat gggctggtgc tacgtggggg
661tagtgcacag gttgcgccag gcccagcggc gcccTCAGCG GCAGAAGGCA GTCAGGGTGG
721CCATCCTGGT GACAAGCATC TTCTTCCTCT GCTGGTCACC CTACCACATC GTCATCTTCC
781TGGACACCCT GGCGAGGCTG AAGGCCGTGG ACAATACCTG CAAGCTGAAT GGCTCTCTCC
841CCGTGGCCAT CACCATGTGT GAGTTCCTGG GCCTGGCCCA CTGCTGCCTC AACCCCATGC
901TCTACACTTT CGCCGGCGTG AAGTTCCGCA GTGACCTGTC GCGGCTCCTG ACCAAGCTGG
961GCTGTACCGG CCCTGCCTCC CTGTGCCAGC TCTTCCCTAG CTGGCGCAGG AGCAGTCTCT
1021CTGAGTCAGA GAATGCCACC TCTCTCACCA CGTTCGACCC AGCTTTCTTG TACAAAGTGG
1081TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1141CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1201AAATTTGATT GTTCTTGGCA AGCCCACGCG TTAAGTCgac aatcaacctc tggattacaa
1261aatttgtgaa agatt

Download FASTA (ORF) (Full)