Construct: ORF TRCN0000489793

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019417.1_s317c1
DNA Barcode:
CGTGGTTAGAGCTGTGTCAAACCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HTR1F (3355)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489793
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3355 HTR1F 5-hydroxytryptamine recepto... NM_000866.4 99.9% 99.7% 1098_1099insG
2 human 3355 HTR1F 5-hydroxytryptamine recepto... NM_001322208.2 99.9% 99.7% 1098_1099insG
3 human 3355 HTR1F 5-hydroxytryptamine recepto... NM_001322209.2 99.9% 99.7% 1098_1099insG
4 human 3355 HTR1F 5-hydroxytryptamine recepto... NM_001322210.2 99.9% 99.7% 1098_1099insG
5 human 3355 HTR1F 5-hydroxytryptamine recepto... XM_005264751.3 99.9% 99.7% 1098_1099insG
6 human 3355 HTR1F 5-hydroxytryptamine recepto... XM_011533664.2 99.9% 99.7% 1098_1099insG
7 mouse 15557 Htr1f 5-hydroxytryptamine (seroto... NM_008310.3 87.8% 94% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
1176
ORF length:
1101
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggat ttcttaaatt catctgatca aaacttgacc tcagaggaac
121tgttaaacag aatgccatcc aaaattctgg tgtccctcac tctgtctggg ctggcactga
181tgacaacaac tatcaactcc cttgtgatcg ctgcaattat tgtgacccgg aagctgcacc
241atccagccaa ttatttaatt tgttcccttg cagtcacaga ttttcttgtg gctgtcctgg
301tgatgccctt cagcattgtg tatattgtga gagagagctg gattatgggg caagtggtct
361gtgacatttg gctgagtgtt gacattacct gctgcacgtg ctccatcttg catctctcag
421ctatagcttt ggatcggtat cgagcaatca cagatgctgt tgagtatgcc aggaaaagga
481ctccaaagca tgctggcatt atgattacaa tagtttggat tatatctgtt tttatctcta
541tgcctcctct attctggagg caccaaggaa ctagcagaga tgatgaatgc atcatcaagc
601acgaccacat tgtttccacc atttactcaa catttggagc tttctacatc ccactggcat
661tgattttgat cctttactac aaaatatata gagcagcaaa gacattatac cacaagagac
721aagcaagtag gattgcaaag gaggaggtga atggCCAAGT CCTTTTGGAG AGTGGTGAGA
781AAAGCACTAA ATCAGTTTCC ACATCCTATG TACTAGAAAA GTCTTTATCT GACCCATCAA
841CAGACTTTGA TAAAATTCAT AGCACAGTGA GAAGTCTCAG GTCTGAATTC AAGCATGAGA
901AATCTTGGAG AAGGCAAAAG ATCTCAGGTA CAAGAGAACG GAAAGCAGCC ACTACCCTGG
961GATTAATCTT GGGTGCATTT GTAATATGTT GGCTTCCTTT TTTTGTAAAA GAATTAGTTG
1021TTAATGTCTG TGACAAATGT AAAATTTCTG AAGAAATGTC CAATTTTTTG GCATGGCTTG
1081GGTATCTCAA TTCCCTTATA AATCCACTGA TTTACACAAT CTTTAATGAA GACTTCAAGA
1141AAGCATTCCA AAAGCTTGTG CGATGTCGAT GTGACCCAGC TTTCTTGTAC AAAGTGGTTG
1201ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1261GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACG
1321TGGTTAGAGC TGTGTCAAAC CGACGCGTTA AGTCgacaat caacctctgg attacaaaat
1381ttgtgaaaga tt

Download FASTA (ORF) (Full)