Construct: ORF TRCN0000489852
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019686.1_s317c1
- DNA Barcode:
- GGCGACATTTAAACTATAATCTTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DIP2C (22982)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489852
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22982 | DIP2C | disco interacting protein 2... | NM_014974.3 | 99.9% | 99.9% | 1248G>A;4668_4669insG |
| 2 | human | 22982 | DIP2C | disco interacting protein 2... | XM_005252427.4 | 99.3% | 99.2% | 1248G>A;3921_3950del;4698_4699insG |
| 3 | human | 22982 | DIP2C | disco interacting protein 2... | XM_011519431.2 | 98.6% | 97% | (many diffs) |
| 4 | human | 22982 | DIP2C | disco interacting protein 2... | XM_011519430.2 | 98% | 96.4% | (many diffs) |
| 5 | human | 22982 | DIP2C | disco interacting protein 2... | XM_005252426.3 | 96.4% | 96.4% | 158_325del;1416G>A;4836_4837insG |
| 6 | human | 22982 | DIP2C | disco interacting protein 2... | XM_005252428.4 | 95.8% | 95.8% | (many diffs) |
| 7 | human | 22982 | DIP2C | disco interacting protein 2... | XM_011519429.3 | 95.2% | 93.6% | (many diffs) |
| 8 | human | 22982 | DIP2C | disco interacting protein 2... | XM_011519428.3 | 94.6% | 93.1% | (many diffs) |
| 9 | human | 22982 | DIP2C | disco interacting protein 2... | XM_011519432.2 | 92.4% | 92.4% | (many diffs) |
| 10 | human | 22982 | DIP2C | disco interacting protein 2... | XM_005252430.3 | 62% | 58.6% | (many diffs) |
| 11 | human | 22982 | DIP2C | disco interacting protein 2... | XM_017015977.1 | 61.6% | 58.2% | (many diffs) |
| 12 | human | 22982 | DIP2C | disco interacting protein 2... | XM_011519433.3 | 55.9% | 55.9% | 0_1ins2037;1884_1913del;2661_2662insG |
| 13 | mouse | 208440 | Dip2c | disco interacting protein 2... | NM_001081426.2 | 87.1% | 99.2% | (many diffs) |
| 14 | mouse | 208440 | Dip2c | disco interacting protein 2... | XM_006516475.3 | 86.9% | 98.9% | (many diffs) |
| 15 | mouse | 208440 | Dip2c | disco interacting protein 2... | XM_006516474.2 | 84.1% | 95.7% | (many diffs) |
| 16 | mouse | 208440 | Dip2c | disco interacting protein 2... | XM_006516473.1 | 83.9% | 95.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 78
- ORF end:
- 4749
- ORF length:
- 4671
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcca attgaccatg gcggaccgca gcctggaggg catggcgctg cccctggagg 121 tgcgggcgcg cctggccgag ctggagctgg agctgtcgga aggtgacatc acacaaaaag 181 gatatgaaaa gaagaggtca aagttaattg gagcctacct tccgcagcct ccgagggtgg 241 accaagcttt gccgcaagaa cgccgggctc ctgtcactcc ttcctccgcc tctcgctacc 301 accgccgacg gtcttcaggg tcacgagatg agcgctatcg gtcagacgtc cacacggaag 361 ctgtccaggc ggctctggcc aaacacaaag agcggaagat ggcagtgcct atgccttcca 421 aacgcaggtc cctggtcgtg cagacctcga tggacgccta cacccctcca gatacctctt 481 ctggctcaga agatgaaggc tcagtgcagg gggactccca gggcaccccc acctccagcc 541 agggcagcat caatatggag cactggatca gccaggccat ccacggctcc accacgtcca 601 ccacctcctc gtcctctacg cagagcgggg gcagcggggc tgcccacagg ctggcggacg 661 tcatggctca gacccacata gaaaatcatt ctgcacctcc tgacgtaacc acgtacacct 721 cagagcactc gatacaggtg gagagaccgc agggttccac ggggtcccgg acagcgccca 781 agtacggcaa cgccgagctc atggagaccg gggatggagt accagtaagt agccgggtgt 841 cagcaaaaat ccagcagctt gtcaataccc tcaaacgacc gaaacgacca cctttacgag 901 aattctttgt cgatgacttt gaagaattat tagaagttca acaaccggat ccgaaccaac 961 caaagccgga gggggcccag atgctggcca tgcgcggaga gcagctgggc gtggtcacga 1021 actggccgcc gtcgctggag gccgcactgc agaggtgggg caccatctcg cccaaggcgc 1081 cctgcctgac caccatggac accaacggga agcccctcta catcctcact tacggcaagc 1141 tgtggacaag aagtatgaag gtcgcttaca gcattctaca caaattaggc acaaagcagg 1201 aacccatggt ccggcctgga gatagggtgg cactggtgtt ccccaacaat gatccggctg 1261 ccttcatggc ggctttctac ggctgcctgc tggccgaggt ggtccccgtg cccatcgagg 1321 tgccactcac caggaaggac gcagggagcc agcagatagg tttcttgctt ggaagctgtg 1381 gagttactgt agccttgact agtgacgcct gccataaagg acttccaaaa agcccaacgg 1441 gagagatccc acagtttaaa ggttggccaa agctgctgtg gtttgtcaca gagtctaaac 1501 atctctccaa accgccccga gactggttcc cacacattaa agatgccaat aacgacactg 1561 cgtatattga gtacaagacg tgtaaggatg gcagtgtgct gggtgtgacg gtgacgagga 1621 ctgcgctgct gacacactgc caggccctga cgcaggcgtg tggctacacg gaagctgaaa 1681 ccattgtgaa tgtgctggat ttcaagaagg acgtcgggct ctggcatggc atcctgacaa 1741 gcgtcatgaa catgatgcat gtgatcagca tcccgtactc gctgatgaag gtgaaccctc 1801 tctcctggat ccagaaggtc tgccagtaca aagcaaaagt ggcgtgtgtg aaatcgaggg 1861 atatgcattg ggcattagta gcacacagag atcagagaga catcaacctc tcctctctgc 1921 gaatgctgat agtggcggac ggcgcgaacc cctggtctat ttcttcttgc gatgcatttc 1981 tcaatgtctt ccaaagtaaa ggccttcgac aggaggtcat ctgtccttgt gccagctcgc 2041 cagaggccct cactgtggcc atccggaggc ccacggatga cagtaaccag cccccgggcc 2101 ggggtgtcct ctccatgcat ggactgacct atggggtcat tcgtgtggac tcggaagaga 2161 agctgtccgt gctcaccgtg caggatgtcg gcctcgtgat gcctggagcc atcatgtgtt 2221 cagtgaagcc agacggggtt cctcagctgt gcagaacgga tgagatcggg gagctgtgtg 2281 tgtgtgcagt tgcgacgggc acgtcctact atggcctctc tggcatgacc aagaacacct 2341 ttgaggtgtt tcccatgaca agctccgggg ctccgatcag tgaataccca ttcataagga 2401 caggcttgct ggggttcgtg ggtcccggag gcctcgtctt cgtggtgggc aagatggatg 2461 gcctcatggt ggtcagcggg cgcaggcaca acgccgacga catcgtggcc actgcgctgg 2521 ccgtagaacc catgaagttt gtctaccggg gaaggatagc cgtgttctcg gtgaccgtgc 2581 tgcacgacga gaggatcgtg atcgtggctg agcagaggcc tgactccacg gaagaggaca 2641 gtttccagtg gatgagccgt gtgctgcagg cgattgacag tatacatcaa gttggagttt 2701 attgcctggc cttggtgcca gcaaacaccc tccccaaaac cccgcttggt gggatccatt 2761 tatcagaaac aaaacagctt tttctggagg gctctctgca cccctgcaat gtcctaatgt 2821 gcccccacac ctgcgtcaca aacttgccta agcctcgaca gaagcagcca gaaatcggcc 2881 ctgcctctgt gatggtgggg aacctggtct ctgggaagag aatcgcccag gccagtggca 2941 gagacctggg tcagatcgaa gataacgacc aggcacgcaa gttcctgttc ctctcagagg 3001 tcttgcagtg gagagcacag accaccccgg accacatcct ctacacgctg ctcaactgtc 3061 ggggtgcgat agcgaactcg ctgacctgcg tgcagctgca caagagagct gagaagatcg 3121 ccgtgatgct gatggagagg ggccaccttc aggacggcga ccacgtggcc ttggtctacc 3181 ccccaggaat agacctgata gcagcgtttt atggttgcct gtacgcaggc tgtgtgccaa 3241 taaccgtccg tcccccgcac ccacagaaca tcgcgacgac gttgcctacc gtcaagatga 3301 ttgtggaggt gagtcgctct gcctgtctga tgacgacaca gctgatctgt aagttgctgc 3361 ggtccaggga ggcggcggcg gctgtggacg tcaggacgtg gcccctcatc ctggacacag 3421 atgatttgcc aaagaagcgg cctgcccaga tctgcaaacc ttgcaaccca gacactcttg 3481 catatctcga cttcagcgtg tccacaactg ggatgctagc tggcgtaaag atgtctcacg 3541 cagccaccag tgccttctgc cgttccatta agctgcagtg tgaactttac ccctctagag 3601 aagtggccat ctgcctggac ccttactgtg gactgggatt tgtcctctgg tgcctctgca 3661 gtgtgtattc tgggcaccag tccatcctga tcccgccctc tgagctggaa accaaccccg 3721 ccttgtggct tcttgccgtg agtcagtaca aagtccgaga cacgttttgc tcctactccg 3781 tgatggagct gtgcaccaag gggctgggct cgcaaacaga gtccctcaag gcgcgagggc 3841 tggacttgtc ccgagtgagg acctgcgtgg ttgtggcgga agagaggcct cggatcgcac 3901 tcacacagtc gttctcaaag ctgtttaagg acctgggcct tcacccgcgg gccgtcagca 3961 cctcgttcgg ttgcagggtg aacctggcga tttgcttgca gggaacctca ggacctgacc 4021 caaccactgt ctacgtggac atgagagccc tgagacacga cagagtccgc ttagtggaaa 4081 gaggatcccc tcatagtctg cccctgatgg aatcgggaaa gatacttcca ggggttcgga 4141 ttataattgc caacccagaa acaaaaggac cgctggggga ctcacacctt ggagagattt 4201 gggttcacag tgcccacaat gccagcggtt atttcactat ttacggagac gaatccctcc 4261 agtcagatca cttcaactca agactaagtt ttggagacac ccagaccatc tgggcacgca 4321 caggctactt ggggttcCTG CGGAGAACTG AGCTCACAGA TGCAAATGGA GAGCGCCATG 4381 ATGCCCTCTA CGTGGTAGGG GCACTGGACG AAGCCATGGA GCTGCGGGGC ATGCGGTACC 4441 ACCCAATCGA CATTGAGACC TCGGTCATCA GAGCCCATAA AAGCGTTACG GAATGTGCTG 4501 TGTTTACCTG GACAAATTTG TTGGTGGTTG TGGTTGAGCT GGATGGGTCG GAACAAGAAG 4561 CCTTGGACCT GGTTCCCTTG GTGACCAACG TGGTCCTGGA GGAGCACTAC CTGATCGTCG 4621 GAGTGGTGGT CGTGGTGGAC ATCGGCGTCA TCCCCATCAA CTCCCGTGGG GAGAAGCAGC 4681 GCATGCACCT GCGAGACGGG TTTTTGGCAG ACCAGCTAGA CCCCATCTAT GTGGCCTACA 4741 ACATGGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 4801 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 4861 CTTGGCTTTA TATATCTTGT GGAAAGGACG AGGCGACATT TAAACTATAA TCTTAACGCG 4921 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt